Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241690g00018 ATGGGGAAGAAGCAGCACAGCAAGGATAGGATGTACATCACTAAAACGGAGTGGGCCACCGAATGGGGTGGCGCCAAATCCAAAGAGAATCGAACCGCTTTCAAACGCCTTCCTTTCTATTGCTGCGCGCTTACGTTTACTCCGTTTGAATATCCGGTGTGCACAGCTGATGGGAGTGTTTTCGATGTTATGAACATAACCCCGTATATTGTTAAATATGGGAAACACCCCGTCACTGGAGCTCCTCTCAAGCAGCAAGATCTCATTCCACTAACTTTCCACAAGAATTCTGAAGGAGAATATCAGTGTCCAGTGCTAAACAAAGTTTTCACCGAATTTACACATATTGTGGCAGTGAAGACTACAGGAAATGTGTTTTGCTATGAGGCCGTCAAAGAATTAAACATCAAAACAAAAAACTGGAAGGAGCTTCTCACTGATGAGCCATTCACTAAGGATGACCTCATAACTATTCAGAATCCTAATGCACTTGACAAGAAGGTTCTTCTGGATTTTGATCATGTCAAAAATAGTTTGAAAGTTGACGATGAAGAAATACAGAAAATGAGATCAGATCCAACCCATAACATAAATGTGTCGGGGGATATCAAGCAAATGCTTCTAGAGCTTGGGACTGAGAAAGGAAAGGAAACCGCAATGCATGGGGGAGGTGGTGGCAAGGCACAACAAGAAAGGGCTGCGGCACTTGCTGCCATCCTAGCTGCAAGATCCCGTGTTAAAGAAGATTCTAAGTCTGATCAAAATGGAGAGGCCAAAGCTCCTCAGGCTTTTAGTATTGTAGATGCTGCATCTGCTTCTGTACATGGAAGGAGTGCAGCTGCTGCTAAAGCCTCTTCCAGCGATAAAACAGCTGCTAGAATAGCTATGCACATGGCTGGTGATAGGGAGGCAGTGAATGCAAAGATGGTGAAAAGCCGTTACACTACTGGAGCTGCTTCCCGGTCATTCACTTCAACATCTTTTGACCCAGTTACGAAAAATGATTTTGAATATGTGAAAGTTGAGAAGAATCCAAAGAAAAAAGGATATGTACAGCTGCATACAACACACGGTGAATTGAACATTGAGCTGCATTGTGATATAACACCCAGGACATGTGAGAACTTTATCACTCTTTGTGAACGTGGATATTATAATGGAGTTGCTTTTCATCGAAACATTCGGAATTTTATGATTCAAGGCGGTGATCCTACTGGAACTGGAAAAGGTGGTCAATCAATATGGGGACAGCCATTTAAAGATGAGCTTAACTCTAAATTGGTTCATTCTGGAAGAGGTGTGGTTAGCATGGCAAATAGTGGGCCACACACAAACGGTTCCCAGTTTTTCATCTTGTACAAGTCCGCAAAACATTTAAACTTTAAACACACAGTATTTGGAGCAGTAGTTGGTGGCTTGACTACATTAGCAGCGATGGAAAAGGTTCCCGTTGATGATAATGATCGGCCTCTGGAGGAAATCAAGATAACAAGTGTCACAATTTTTGTGAATCCTTACACAGAACCAGATGAGGAAGAAGAGAAGGATAAAGAAAAAGAGAAGATGGAGGATGAAGATAATAGTAAGGTGGGATCATGGTATAGCAATCCTGGAGCTGGAACATCAGAATCTGGAGGTACGGTTGGTGGTGGTGTTGGCAAGTACTTGAAAGCTAGAACTGGTCAACAGCCTGAGTCAACCAGCACAGCGGTTGTAGGCAAGAAAAGAAAAGCCGGAGCTGCCACCGGTGAATTTAAAGATTTTTCTGCATGGTAA 1776 0.4296 MGKKQHSKDRMYITKTEWATEWGGAKSKENRTAFKRLPFYCCALTFTPFEYPVCTADGSVFDVMNITPYIVKYGKHPVTGAPLKQQDLIPLTFHKNSEGEYQCPVLNKVFTEFTHIVAVKTTGNVFCYEAVKELNIKTKNWKELLTDEPFTKDDLITIQNPNALDKKVLLDFDHVKNSLKVDDEEIQKMRSDPTHNINVSGDIKQMLLELGTEKGKETAMHGGGGGKAQQERAAALAAILAARSRVKEDSKSDQNGEAKAPQAFSIVDAASASVHGRSAAAAKASSSDKTAARIAMHMAGDREAVNAKMVKSRYTTGAASRSFTSTSFDPVTKNDFEYVKVEKNPKKKGYVQLHTTHGELNIELHCDITPRTCENFITLCERGYYNGVAFHRNIRNFMIQGGDPTGTGKGGQSIWGQPFKDELNSKLVHSGRGVVSMANSGPHTNGSQFFILYKSAKHLNFKHTVFGAVVGGLTTLAAMEKVPVDDNDRPLEEIKITSVTIFVNPYTEPDEEEEKDKEKEKMEDEDNSKVGSWYSNPGAGTSESGGTVGGGVGKYLKARTGQQPESTSTAVVGKKRKAGAATGEFKDFSAW 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241690g00018 591 ProSiteProfiles U-box domain profile. 35 108 IPR003613 GO:0004842|GO:0016567
Stsc241690g00018 591 MobiDBLite consensus disorder prediction 505 591 - -
Stsc241690g00018 591 FunFam Peptidyl-prolyl cis-trans isomerase 2 41 96 - -
Stsc241690g00018 591 SUPERFAMILY RING/U-box 38 104 - -
Stsc241690g00018 591 FunFam Peptidyl-prolyl cis-trans isomerase cyp65 331 515 - -
Stsc241690g00018 591 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 350 500 IPR002130 GO:0000413|GO:0003755
Stsc241690g00018 591 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 40 96 IPR013083 -
Stsc241690g00018 591 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 385 402 IPR020892 GO:0003755|GO:0006457
Stsc241690g00018 591 Gene3D - 331 515 IPR029000 -
Stsc241690g00018 591 CDD cyclophilin_RING 350 507 - -
Stsc241690g00018 591 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 354 501 IPR002130 GO:0000413|GO:0003755
Stsc241690g00018 591 SMART Ubox_2 39 101 IPR003613 GO:0004842|GO:0016567
Stsc241690g00018 591 SUPERFAMILY Cyclophilin-like 350 515 IPR029000 -
Stsc241690g00018 591 MobiDBLite consensus disorder prediction 508 528 - -
Stsc241690g00018 591 CDD RING-Ubox_PPIL2 38 110 IPR026951 -
Stsc241690g00018 591 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 390 402 IPR002130 GO:0000413|GO:0003755
Stsc241690g00018 591 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 433 448 IPR002130 GO:0000413|GO:0003755
Stsc241690g00018 591 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 461 476 IPR002130 GO:0000413|GO:0003755
Stsc241690g00018 591 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 448 460 IPR002130 GO:0000413|GO:0003755
Stsc241690g00018 591 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 364 379 IPR002130 GO:0000413|GO:0003755
Stsc241690g00018 591 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 344 515 IPR044666 -
Stsc241690g00018 591 MobiDBLite consensus disorder prediction 529 543 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241690g00018 Stsc-Chr241690 132531 137343 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241690g00018 1 591 U-box Gene Family AT5G67530 75.914 0.0 909
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241690g00018 K10598 - gmx:100819923 994.571