Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241690g00015 ATGATGGAGAGTTACTTAAAAGAGAATTTTGATGTACAGCCTAAGAACTCATCTGGAGAGGCACTTGAGAGATGGAGGAAGCTATGTGGGATGGTCAAGAACCCCAAAAGAAGGTTCCGTTTCACTGCAAATCTCTCCAAGAGACAAGAAGCTGCTGCCATGCGTCTTGGCAACAAGGAGAAGCTGAGGGTGGCAGTTTTAGTTTCCAAAGCTGCATTTCAGTTTATCCAAGGTGCACAAGTGCAACCAAGCGATGATAAAGTACCTGAGGAAGTTAAAGCAGCAGGTTTCGAAATCAGTGGTGATGAATTAGGGTCTATTGTTGAAGGCCATGATGTAAAGAAGCTGAAATCTCATGGTGGGGTTGATGGCATTGCAGACAAGCTTTCTACATCAACCACCAAGGGCCTCATCAGCAGTGATCCTGATTCATTGAACAAGAGACAAGAAATATATGGGATCAACAAATTCGCCGAAAGCGAAGCCAAGAGTTTCTGGGTTTTTGTTTGGGAAGCCCTTCAAGACATGACTCTGATGATACTTGGAGTTTGTGCTTTTGTGTCTCTGATTGTTGGCATTGCAACAGAAGGTTGGCCTAAGGGAGCGCATGACGGTCTCGGCATTGTTGCCAGCATACTTCTGGTTGTGTTTGTGACAGCAACCAGTGATTATAGGCAGTCATTGCAATTCAAAGATTTGGACAAGGAGAAGAAGAAGATTGCAGTTCAGGTAACAAGAGACGGTTGCAGGCAGAAGATGTCAATATATGAATTACTTGCTGGTGATATTGTTCATCTTTCAATTGGTGATCAAGTACCTGCTGATGGACTATTTCTCTCTGGATTCTCTGTGTTGATTGATGAATCAAGCTTGACAGGGGAGAGTGAGCCGGTTATGGTGAACTCTGAGTATCCATTTCTTCTTTCTGGAACCAAGGTGCAAGATGGATCTTGCAAGATGTTGGTTACCACTGTGGGAATGAGGACTCAATGGGGGAAGTTGATGGCAACTCTCAGTGAAGGTGGAGATGATGAAACTCCATTACAGGTTAAATTGAATGGAGTTGCAACCATTATTGGCAAGATAGGCCTCTTCTTTGCCGTCGTTACATTCGCCGTTCTTGTGCAAGGACTAGTGAGCCGTAAGCTCCAAGAAGGCAGAATATGGAGCTGGAATGGAGATGATGCTCTTGAGATGCTGGAATTCTTCNNNNNNNNNNTAGTTGTTGCTGTTCCAGAAGGGCTGCCATTGGCTGTGACATTGAGCCTCGCCTTCGCCATGAAGAAGATGATGAATGATAAGGCCCTTGTGAGGCATTTGGCAGCATGTGAAACCATGGGATCTGCCACAACTATATGCAGTGACAAGACCGGAACTCTAACAACTAATCACATGACTGTTGTGAAAACATGCATTTGTATGAACACCAGTCAAGTGAGTAACAATAAGGCCTCTGATTTGTGTTCTAAGCTTCCAGATTCTTCCATGAAACTTCTCCTTCAGTCAATATTCAACAACACTGGAGGAGAGGTTGTGGTTAACAAGGATGGGAAGAGAGAGATCTTAGGGACACCAACAGAGACTGCAATATTGGAGTTTGGCTTGTCACTTGGTGGAGATTTTCAAGCAGAGAGACAAGAATGCAATGTTGTTAAAGTTGAGCCATTCAACTCCACCAAGAAGAAAATGAGCCTTGTGGTGGAGCTCCCTGGTGGTGGATTGCGTGCACACTGCAAAGGTGCTTCTGAGATCATTCTGGCCTCTTGTGACAAGGTGCTTAACTCGGCCGGCAAGGTTGTCCCGCTCAATGAAGAATCAAGTAACCATCTCAAGGCTACAATAGACCAGTTTGCCAATGAGGCACTCAGAACATTATGCCTTGCCTATATGGAATTAGATGATGGATTCTCTTCTGAGGATCCAATTCCTGATTCTGGCTATACTTGTATAGGAATTGTTGGTATCAAGGATCCGGTTCGTCCTGGGGTTAAGGAATCTGTTGCAGTGTGCCGCTCTGCTGGGATCACAGTGAGGATGGTTACAGGAGATAATATCAATACTGCCAAGGCTATAGCCAGGGAATGTGGGATCTTGACTGATGATGGCATAGCCATTGAAGGTCCAGAGTTCAGAGAGAAGAGTGAGGAGGAATTGCTTAAACTCATTCCCAAAATTCAGGTTATGGCTCGATCTTCACCATTAGACAAACATACATTGGTGAAACACTTGCGTAACACGTTTGGGGAGGTTGTAGCTGTAACTGGTGATGGAACAAATGATGCCCCAGCACTTCATGAAGCTGACATTGGACTTGCAATGGGGATTGCTGGAACTGAGGTTGCAAAAGAAAGTGCAGATGTCATAATTCTAGATGACAACTTCTCCACAATAGTGACAGTGGCCAAATGGGGACGTTCTGTTTACATAAATATTCAAAAATTCGTGCAGTTTCAGCTAACGGTTAATGTGGTTGCATTGATAGTGAACTTCACCTCAGCATGTGTGACAGGAAGTGCACCCCTCACAGCTGTTCAACTCTTGTGGGTGAACATGATCATGGATACACTGGGAGCACTAGCACTCGCAACCGAACCTCCGAATGATGATTTAATGAAGCGTCCGCCCGTTGGAAGGAAGGGCAATTTCATCAGCAATGTCATGTGGAGGAACATCTTAGGACAATCATTGTATCAGTTTATGGTGATATGGTTTCTTCAGTCAAGAGGAAAGTCAATATTCTCTCTTGAAGGCCCCGACTCTGATCTTGTCTTGAACACACTCATTTTCAACACATTTGTCTTCTGTCAGGTTTTCAATGAGATAAACTCACGTGAGATGGAGGAAATAGATGTTTTCAAAGGCATATTGAAGAATAATGTCTTCGTGGGTGTCCTCACTGCCACTGTTTTGTTCCAAATCATAATAGTGGAGTACTTAGGAACCTTTGCAAACACGACACCTCTAACTCTGCTTCAATGGTTCTTCAGCTTGTTAGTTGGATTTTTAGGCATGCCAATTGCAGCTCGCTTGAAGAAGATCCGTGTTTGA 3048 0.4403 MMESYLKENFDVQPKNSSGEALERWRKLCGMVKNPKRRFRFTANLSKRQEAAAMRLGNKEKLRVAVLVSKAAFQFIQGAQVQPSDDKVPEEVKAAGFEISGDELGSIVEGHDVKKLKSHGGVDGIADKLSTSTTKGLISSDPDSLNKRQEIYGINKFAESEAKSFWVFVWEALQDMTLMILGVCAFVSLIVGIATEGWPKGAHDGLGIVASILLVVFVTATSDYRQSLQFKDLDKEKKKIAVQVTRDGCRQKMSIYELLAGDIVHLSIGDQVPADGLFLSGFSVLIDESSLTGESEPVMVNSEYPFLLSGTKVQDGSCKMLVTTVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGKIGLFFAVVTFAVLVQGLVSRKLQEGRIWSWNGDDALEMLEFFXXXXVVAVPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSATTICSDKTGTLTTNHMTVVKTCICMNTSQVSNNKASDLCSKLPDSSMKLLLQSIFNNTGGEVVVNKDGKREILGTPTETAILEFGLSLGGDFQAERQECNVVKVEPFNSTKKKMSLVVELPGGGLRAHCKGASEIILASCDKVLNSAGKVVPLNEESSNHLKATIDQFANEALRTLCLAYMELDDGFSSEDPIPDSGYTCIGIVGIKDPVRPGVKESVAVCRSAGITVRMVTGDNINTAKAIARECGILTDDGIAIEGPEFREKSEEELLKLIPKIQVMARSSPLDKHTLVKHLRNTFGEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIVTVAKWGRSVYINIQKFVQFQLTVNVVALIVNFTSACVTGSAPLTAVQLLWVNMIMDTLGALALATEPPNDDLMKRPPVGRKGNFISNVMWRNILGQSLYQFMVIWFLQSRGKSIFSLEGPDSDLVLNTLIFNTFVFCQVFNEINSREMEEIDVFKGILKNNVFVGVLTATVLFQIIIVEYLGTFANTTPLTLLQWFFSLLVGFLGMPIAARLKKIRV 1015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241690g00015 1015 SUPERFAMILY Calcium ATPase, transmembrane domain M 119 1013 IPR023298 -
Stsc241690g00015 1015 SMART Cation_ATPase_N_a_2 118 193 IPR004014 -
Stsc241690g00015 1015 Gene3D - 143 339 - -
Stsc241690g00015 1015 SUPERFAMILY Calcium ATPase, transduction domain A 241 336 IPR008250 -
Stsc241690g00015 1015 ProSitePatterns E1-E2 ATPases phosphorylation site. 455 461 IPR018303 -
Stsc241690g00015 1015 NCBIfam HAD-IC family P-type ATPase 550 699 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc241690g00015 1015 NCBIfam HAD-IC family P-type ATPase 724 841 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc241690g00015 1015 NCBIfam HAD-IC family P-type ATPase 208 475 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc241690g00015 1015 Pfam Cation transport ATPase (P-type) 514 592 - -
Stsc241690g00015 1015 FunFam Calcium-transporting ATPase 219 339 - -
Stsc241690g00015 1015 CDD P-type_ATPase_Ca_PMCA-like 145 887 - -
Stsc241690g00015 1015 Gene3D - 463 658 IPR023299 GO:0000166
Stsc241690g00015 1015 FunFam Calcium-transporting ATPase 463 658 - -
Stsc241690g00015 1015 FunFam Calcium-transporting ATPase 771 1015 - -
Stsc241690g00015 1015 Pfam Cation transporter/ATPase, N-terminus 119 188 IPR004014 -
Stsc241690g00015 1015 Pfam Ca2+-ATPase N terminal autoinhibitory domain 6 50 IPR024750 GO:0005516
Stsc241690g00015 1015 Pfam E1-E2 ATPase 239 431 - -
Stsc241690g00015 1015 Gene3D - 450 799 IPR023214 -
Stsc241690g00015 1015 PRINTS P-type cation-transporting ATPase superfamily signature 778 790 - -
Stsc241690g00015 1015 PRINTS P-type cation-transporting ATPase superfamily signature 673 683 - -
Stsc241690g00015 1015 PRINTS P-type cation-transporting ATPase superfamily signature 651 662 - -
Stsc241690g00015 1015 PRINTS P-type cation-transporting ATPase superfamily signature 287 301 - -
Stsc241690g00015 1015 PRINTS P-type cation-transporting ATPase superfamily signature 754 773 - -
Stsc241690g00015 1015 PRINTS P-type cation-transporting ATPase superfamily signature 453 467 - -
Stsc241690g00015 1015 Pfam Cation transporting ATPase, C-terminus 839 1012 IPR006068 -
Stsc241690g00015 1015 SFLD Haloacid Dehalogenase 435 806 - -
Stsc241690g00015 1015 FunFam Calcium-transporting ATPase 647 799 - -
Stsc241690g00015 1015 FunFam Calcium-transporting ATPase 17 77 - -
Stsc241690g00015 1015 NCBIfam calcium-translocating P-type ATPase, PMCA-type 111 1013 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Stsc241690g00015 1015 SUPERFAMILY HAD-like 451 859 IPR036412 -
Stsc241690g00015 1015 PANTHER CATION TRANSPORTING ATPASE 87 1014 - -
Stsc241690g00015 1015 SFLD p-type atpase 435 806 IPR044492 -
Stsc241690g00015 1015 Gene3D - 17 77 - -
Stsc241690g00015 1015 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 459 663 IPR023299 GO:0000166
Stsc241690g00015 1015 PRINTS H+-transporting ATPase (proton pump) signature 610 628 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc241690g00015 1015 PRINTS H+-transporting ATPase (proton pump) signature 754 770 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc241690g00015 1015 PRINTS H+-transporting ATPase (proton pump) signature 786 811 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc241690g00015 1015 Gene3D - 171 1004 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241690g00015 Stsc-Chr241690 116472 120125 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241690g00015 2 1015 Primary Pumps ATPases AT4G37640 81.139 0.0 1694