Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241690g00013 ATGGGAAGCTCTTCTGTCACTACCACATCCTTTTCTTTGTCAAGTCTATTGTGCGAAGAAGAAGGTCATGCTTGCTTCTTTGAAGATGAACATCAACATGATGAACACACTGGGATTCTTGTTGATGATGAATCTTCCTCTTTTGTTTTCGATGAGGAAGATGAAGAGGAATACATTGAGTATTTGTTCAGCCAAGAAACTGCTTTTGGATCCCACATTCATCATGATTTCTGGTTGAGGACTGCTCGTTTCAATGCCATTGATTGGATTTTCAATACACAGGCAGAACTTGGATTCAAAGTTCACACAGCTTATTTATCAGTCTCTTACTTTGATCGGTTTCTTTCAAAAAGATCCATTGATGAATCAAAACCTTGGGCTGTTCAATTGTTATCAGTGGCATGCTTATCCCTAGCAGCAAAAATGGAGGAGCAATATGTGCCTGCTCTCTCTGAATATCCAATAGTTGAATACAGGTTTGAGAGCAAAGTGATTAAGAACATGGAGCTTCTCATTCTTGCTACCTTGGATTGGAAAATGGGATCATCACCAACTCCTTTCTCTTATCTCCATTACTTTCTCACAAAGTTCTTCCCTGGATCCAATTCAGCAAACACAATCATCACAAAAGCCACCCAACACATTGTAGCCATGGTCAAAGATGTTAATTTGATGGATCAACGGCCATCTATAATAGCCTTGGCTGCAATATTGGCAGCAGTTGATGCTACATTAACAAGAAAGGCCATGGATCTTAGGATAAGAGAAATCTCATCTTGGGGCAATCTAGAAAGTGGAGATGTATTTTCCTGTTACAATCTTATACAGGAGAAGAGAAGGAGCAAAGTTAAGACCCCTTGCTCGAATTTAATGTCAAACCAATCCAACTCCACGTGTGTTCTTGAGAATCAATCTGACACCACTTGTTCTGGAGTTAAGAGAAAACTCTCTTTTATTCAGGACACTGAGGAAACTGAAAACTACAAGAAGCTAAATCGTCACTAG 1005 0.395 MGSSSVTTTSFSLSSLLCEEEGHACFFEDEHQHDEHTGILVDDESSSFVFDEEDEEEYIEYLFSQETAFGSHIHHDFWLRTARFNAIDWIFNTQAELGFKVHTAYLSVSYFDRFLSKRSIDESKPWAVQLLSVACLSLAAKMEEQYVPALSEYPIVEYRFESKVIKNMELLILATLDWKMGSSPTPFSYLHYFLTKFFPGSNSANTIITKATQHIVAMVKDVNLMDQRPSIIALAAILAAVDATLTRKAMDLRIREISSWGNLESGDVFSCYNLIQEKRRSKVKTPCSNLMSNQSNSTCVLENQSDTTCSGVKRKLSFIQDTEETENYKKLNRH 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241690g00013 334 SMART Cyclin_C_2 184 319 IPR004367 -
Stsc241690g00013 334 Pfam Cyclin, C-terminal domain 184 289 IPR004367 -
Stsc241690g00013 334 CDD CYCLIN_AtCycD-like_rpt1 82 178 - -
Stsc241690g00013 334 SMART cyclin_7 88 174 IPR013763 -
Stsc241690g00013 334 ProSitePatterns Cyclins signature. 83 114 IPR006671 -
Stsc241690g00013 334 Pfam Cyclin, N-terminal domain 81 180 IPR006671 -
Stsc241690g00013 334 SUPERFAMILY Cyclin-like 48 180 IPR036915 -
Stsc241690g00013 334 Gene3D - 80 182 - -
Stsc241690g00013 334 Gene3D - 183 249 - -
Stsc241690g00013 334 FunFam Cyclin-D5-1 78 181 - -
Stsc241690g00013 334 PANTHER CYCLINS 42 284 IPR039361 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241690g00013 Stsc-Chr241690 106586 108130 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241690g00013 54 265 Core Cell Cycle Gene Families AT4G37630 38.288 1.09e-39 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241690g00013 K18811 - gmx:100798140 422.55