LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc241690g00006	ATGGCCATAAGGCCCTTCCAATTCCAATCTTCCACCTTCTCCCGCGACACTCTCCTCTCTCTTTTCCGCACTTACCACAACAATCTCCATCTTCATTCTCATATTTCTTCTTCTTCTTCCTCTTTCCGCACTCAAACCCTCCCTTCTCTCCCCCCAATTCTCCACCTCCGTAGCTTCGCCGCCTCGGCGGCATCTTCATTCTCTCGCCCCCACCGCTCTCATTCTCCTCCGCCGCCACCACCTGACACCCTGGCGCAGAAGATTGGAAAGTCCACTCGCCGCCCCGGCGCCACCTCCAAGGCCAGGATTTATGCCGATATCAACGTCGTCCGTCCCAAGGAATATTGGGACTATGAGAACCTCACCGTCCAGTGGGGGGAGCAAGATGACTATGAGGTTGTGAGGAAGGTGGGAAGAGGGAAATACAGTGAGGTCTTCGAGGGCGTTCACTCCACCGATAATGAAAAATGCATCATCAAGATCCTCAAACCCGTCAAGAAGAAAAAGATAAAGAGGGAGATCAAAATATTGCAAAATCTTTGTGGAGGGCCCAATGTTATAAAGCTGCTTGACATTGTTAGAGACCAGCAATCAAAGACCCCAAGCCTTATATTTGAATATGTCAATAACACTGATTTTAAAGTGCTCTACCCTACCCTGTCAGATTATGATATCCGATATTATATCTACGAACTTCTAAAGGCACTGGATTATTGCCACTCTCAAGGAATCATGCATCGCGATGTAAAGCCACATAATACTTCGAAGACAATGCAGTCAAGATATTTCAAAGGTCCTGAGCTTCTTGTTGATCTTCAGGACTATGATTACTCTCTCGATTTATGGAGTCTTGGTTGTATGTTTGCTGGAATGATTTTTCGTAAGGAGCCATTCTTTTACGGACATGATAACTATGATCAACTAGTCAAAATAGCCAAGGTACTTGGAACAGATGAATTAAATGCGTATCTGAACAAGTACCGCATAGAGTTGGACCCAAATCTTGCAGCACTTGTTGGGAGGCATGGCAGAAAGCCATGGTCGAAGTTTATTAGTGTAGAAAACCAACACTTGGCAGTTCCTGAGGCTATTGACTTCGTTGACAAGTTACTCCGGTATGATCACCAAGAACGACCCACTGCAAAAGAAGCCATGGCCCACCCTTACTTCAACCCTGTCAGAAATGCAGAAAGCAGCCGAACTCATACACATTGA	1215	0.4609	MAIRPFQFQSSTFSRDTLLSLFRTYHNNLHLHSHISSSSSSFRTQTLPSLPPILHLRSFAASAASSFSRPHRSHSPPPPPPDTLAQKIGKSTRRPGATSKARIYADINVVRPKEYWDYENLTVQWGEQDDYEVVRKVGRGKYSEVFEGVHSTDNEKCIIKILKPVKKKKIKREIKILQNLCGGPNVIKLLDIVRDQQSKTPSLIFEYVNNTDFKVLYPTLSDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNTSKTMQSRYFKGPELLVDLQDYDYSLDLWSLGCMFAGMIFRKEPFFYGHDNYDQLVKIAKVLGTDELNAYLNKYRIELDPNLAALVGRHGRKPWSKFISVENQHLAVPEAIDFVDKLLRYDHQERPTAKEAMAHPYFNPVRNAESSRTHTH	404

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc241690g00006	404	MobiDBLite	consensus disorder prediction	66	97	-	-
	Stsc241690g00006	404	Gene3D	Transferase(Phosphotransferase) domain 1	204	254	-	-
	Stsc241690g00006	404	SMART	serkin_6	131	390	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc241690g00006	404	MobiDBLite	consensus disorder prediction	384	404	-	-
	Stsc241690g00006	404	ProSiteProfiles	Protein kinase domain profile.	131	390	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc241690g00006	404	FunFam	Casein kinase II subunit alpha	254	393	-	-
	Stsc241690g00006	404	Gene3D	Transferase(Phosphotransferase) domain 1	257	391	-	-
	Stsc241690g00006	404	PANTHER	CASEIN KINASE II SUBUNIT ALPHA	95	254	IPR045216	GO:0004674\|GO:0006468
	Stsc241690g00006	404	FunFam	Casein kinase II subunit alpha	117	207	-	-
	Stsc241690g00006	404	Gene3D	Phosphorylase Kinase; domain 1	117	203	-	-
	Stsc241690g00006	404	CDD	STKc_CK2_alpha	112	390	IPR045216	GO:0004674\|GO:0006468
	Stsc241690g00006	404	SUPERFAMILY	Protein kinase-like (PK-like)	105	394	IPR011009	-
	Stsc241690g00006	404	Pfam	Protein kinase domain	131	253	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc241690g00006	404	Pfam	Protein kinase domain	257	390	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc241690g00006	404	ProSitePatterns	Protein kinases ATP-binding region signature.	137	160	IPR017441	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc241690g00006	Stsc-Chr241690	38039	42317	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc241690g00006	134	391	MAP Kinase Gene Family	AT3G59790	30.565	3.56e-31	120

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CK2	Stsc241690g00006		Pkinase	8.8e-19	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc241690g00006	K03097		-	qsa:O6P43_024562	597.43