Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241689g00026 ATGGAATTTCAGAACCGCAGAGTACTACTCCTCCTCGACAAGGATGTTCCAATCTCCGCACCGCCACCGCCGCCGCCACCACCACCGTCAGCGACGGCCATGTACGGATCATCGTCATTGCAAATTCCACCTCGTCCGATTTTTACTTCAAACTTAGCATACGCCTTCATCATCCTCCTCACCACTCTCTTCTTTCTAGCCTTCATCCTCCTCTTCCTCCGCCAATTCTCGTCCTCCTCCTCCGCCACCGTCACCCGCAGCCAATGTTCTGAACCGACGAAGAAGAAGTCGGCACTGGTGACAGTTCCGTACAGTGGCGGGAACAGGAAGAAGCATTGGCAAGAGCAGGAAGAAGAGTGCGCTATATGCTTGGAAGAGCTTCGCGAGGGTGAAACCGTAAAAATGATACCTCACTGCAAGCACGTGTTCCACCCTAACTGCATTGACACGTGGCTCCTCACTCACGTGACGTGCCCTGTGTGCAGGTGCTCTAAGGTTTGTGAAGAAGAGGAGGAGGAGGAGGAAGAGAAAGAGGGAGAAACAAGAATAAGAAGAGAGGTTGAAATTCGGTTACAAGATTCTCAAACTGAGAGAGCGATGAGTAGTAGTGATGAGAGAAGAGAAGCAATTGAAATTATTGGTGGGTTGAGAAGATCACTCAGCTTATGA 669 0.5052 MEFQNRRVLLLLDKDVPISAPPPPPPPPPSATAMYGSSSLQIPPRPIFTSNLAYAFIILLTTLFFLAFILLFLRQFSSSSSATVTRSQCSEPTKKKSALVTVPYSGGNRKKHWQEQEEECAICLEELREGETVKMIPHCKHVFHPNCIDTWLLTHVTCPVCRCSKVCEEEEEEEEEKEGETRIRREVEIRLQDSQTERAMSSSDERREAIEIIGGLRRSLSL 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241689g00026 222 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 167 IPR013083 -
Stsc241689g00026 222 MobiDBLite consensus disorder prediction 15 36 - -
Stsc241689g00026 222 MobiDBLite consensus disorder prediction 17 32 - -
Stsc241689g00026 222 SUPERFAMILY RING/U-box 113 165 - -
Stsc241689g00026 222 CDD RING-H2_PA-TM-RING 119 162 - -
Stsc241689g00026 222 ProSiteProfiles Zinc finger RING-type profile. 120 162 IPR001841 -
Stsc241689g00026 222 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 39 182 - -
Stsc241689g00026 222 SMART ring_2 120 161 IPR001841 -
Stsc241689g00026 222 Pfam Ring finger domain 119 162 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241689g00026 Stsc-Chr241689 165620 166288 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241689g00026 50 222 C3H Transcription Factor Family AT2G27940 35.385 3.37e-26 99.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241689g00026 - - aip:107634124 247.284