Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc241689g00026 | ATGGAATTTCAGAACCGCAGAGTACTACTCCTCCTCGACAAGGATGTTCCAATCTCCGCACCGCCACCGCCGCCGCCACCACCACCGTCAGCGACGGCCATGTACGGATCATCGTCATTGCAAATTCCACCTCGTCCGATTTTTACTTCAAACTTAGCATACGCCTTCATCATCCTCCTCACCACTCTCTTCTTTCTAGCCTTCATCCTCCTCTTCCTCCGCCAATTCTCGTCCTCCTCCTCCGCCACCGTCACCCGCAGCCAATGTTCTGAACCGACGAAGAAGAAGTCGGCACTGGTGACAGTTCCGTACAGTGGCGGGAACAGGAAGAAGCATTGGCAAGAGCAGGAAGAAGAGTGCGCTATATGCTTGGAAGAGCTTCGCGAGGGTGAAACCGTAAAAATGATACCTCACTGCAAGCACGTGTTCCACCCTAACTGCATTGACACGTGGCTCCTCACTCACGTGACGTGCCCTGTGTGCAGGTGCTCTAAGGTTTGTGAAGAAGAGGAGGAGGAGGAGGAAGAGAAAGAGGGAGAAACAAGAATAAGAAGAGAGGTTGAAATTCGGTTACAAGATTCTCAAACTGAGAGAGCGATGAGTAGTAGTGATGAGAGAAGAGAAGCAATTGAAATTATTGGTGGGTTGAGAAGATCACTCAGCTTATGA | 669 | 0.5052 | MEFQNRRVLLLLDKDVPISAPPPPPPPPPSATAMYGSSSLQIPPRPIFTSNLAYAFIILLTTLFFLAFILLFLRQFSSSSSATVTRSQCSEPTKKKSALVTVPYSGGNRKKHWQEQEEECAICLEELREGETVKMIPHCKHVFHPNCIDTWLLTHVTCPVCRCSKVCEEEEEEEEEKEGETRIRREVEIRLQDSQTERAMSSSDERREAIEIIGGLRRSLSL | 222 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc241689g00026 | 222 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 79 | 167 | IPR013083 | - | |
Stsc241689g00026 | 222 | MobiDBLite | consensus disorder prediction | 15 | 36 | - | - | |
Stsc241689g00026 | 222 | MobiDBLite | consensus disorder prediction | 17 | 32 | - | - | |
Stsc241689g00026 | 222 | SUPERFAMILY | RING/U-box | 113 | 165 | - | - | |
Stsc241689g00026 | 222 | CDD | RING-H2_PA-TM-RING | 119 | 162 | - | - | |
Stsc241689g00026 | 222 | ProSiteProfiles | Zinc finger RING-type profile. | 120 | 162 | IPR001841 | - | |
Stsc241689g00026 | 222 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE ATL42 | 39 | 182 | - | - | |
Stsc241689g00026 | 222 | SMART | ring_2 | 120 | 161 | IPR001841 | - | |
Stsc241689g00026 | 222 | Pfam | Ring finger domain | 119 | 162 | IPR001841 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc241689g00026 | Stsc-Chr241689 | 165620 | 166288 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc241689g00026 | 50 | 222 | C3H Transcription Factor Family | AT2G27940 | 35.385 | 3.37e-26 | 99.8 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc241689g00026 | - | - | aip:107634124 | 247.284 |