Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241689g00025 ATGTCGTCTAACAGCGATATTGAATTTAATGCAATTGAACAAACTGCTGCTAGCAGTTCATATGTGGTCCCAACTGTGGATTCTGAACGGTCTGAATCTAATACCAGAAGAAATGATGGACTTGAGATGATGGGATGCCAGAATTGTTTGCAGGAAACAACATCTGAGAATCCAGATCAACATGACTCTACTGGTCATGTAGAAGGACCTCAGTTACAGAGTTTACAAGTTGAACCAGTAAATCGTCTATCATCCAGTGTGGCTGTTGAAAGAAGAGATAGCACTGGGCAAATTGCTGACGTGAACCTTGTGATGTCAGTTGAAGATACTGCTAGTGATCACATGCAGCGAAGTTTGCAAACTGAAGATCCAATTCAGAGTGCTATGCAGGAATTCAGTGAGGCACACAATGATCAACTTCGAGTGGGTGATATAAATAATGGTGAAAATGATTCATCAAGCCACATTAACCCCATGGAGGAAAATAGTGTTGATATGAATCAGAACGAATCTGCTGCTCTGGTAGGTGAACCTCTGGAAGAAGGTACTGAAAATGGACGAAGTGGCTGGAATCAGAGTAACCATGAATGGAGAAATAGCACTGACGAAGGTATAGATGATAATCAATTCAGCAGTACATCATTGCCGTGGCCTGAAAATGGATATGGAAATGAGGATGGAGAAAACTCTCGACTGCAAGAAGGTCCTGAAGTCTGGCAAGAGGATGGTGGCTTCCAAGAGGCTGTAGAAAATTGGTTGGGGGCTCCTTCTGATCTTGGAAGTGCTCCAGTTGGCAGGGTTCATGGATTTTATTTTCCAGATGATGACAATGTATACAGTGTTGAACTCAGGGAACTGCTTAATAGGAGAAGTGTCTCCAACCTCCTTCGTAGCAGTTTCCGTGATAGCCTTGACCAGTTGATACAATCGTATGTTGTAAGACAAGGCCATAATCAGATGGAGTGGGAGCTACAAGAAACAACCCCTTCTACTGCCTCTGTTGAACATGACCTTGAACAGCAGAGTAGGGATCAGATTGTTGGTCAGGAGGGTACTGTTAATAGTCCACTTGACCTACCTTCTTTACCTATCCCTCCTCCTCTGCCTAATTGGGACCGGCACGCTCGCCGTGACAGCTGGTCACAGTCACAGAGTGACATGAATAATCAGCATCTAGGAGGAATTGATTGGGAGGTTGTCAATGACTTGAGAATTGACATGGCTAGATTACAGCAAAGGATGAACAATATGCAAAGAATGCTGGAGGCTTGTATGGATATGCAGCTGGAGTTGCAGCGTTCCATAAGACAGGAAGTTTCTGCTGCCCTAAATCGTTCGGCTGTTTCATCAGGAACAAATGAGTTGGTGTCATCAGATGAATCTAAATGGGAATGTGTGAGGAAAGGGCTTTGCTGTATATGCTGTGAAAGCAATATTGATTCTTTGTTGTACAGATGTGGGCACTTGTGTACATGTTCTAAATGTGCCAATGAGTTGCTTCAAAGTAAAAGGAAGTGCCCGATGTGTCAAGCCCCCGTCGTGGAGGTTATACGTGCTTATTCTATACTATAG 1572 0.4364 MSSNSDIEFNAIEQTAASSSYVVPTVDSERSESNTRRNDGLEMMGCQNCLQETTSENPDQHDSTGHVEGPQLQSLQVEPVNRLSSSVAVERRDSTGQIADVNLVMSVEDTASDHMQRSLQTEDPIQSAMQEFSEAHNDQLRVGDINNGENDSSSHINPMEENSVDMNQNESAALVGEPLEEGTENGRSGWNQSNHEWRNSTDEGIDDNQFSSTSLPWPENGYGNEDGENSRLQEGPEVWQEDGGFQEAVENWLGAPSDLGSAPVGRVHGFYFPDDDNVYSVELRELLNRRSVSNLLRSSFRDSLDQLIQSYVVRQGHNQMEWELQETTPSTASVEHDLEQQSRDQIVGQEGTVNSPLDLPSLPIPPPLPNWDRHARRDSWSQSQSDMNNQHLGGIDWEVVNDLRIDMARLQQRMNNMQRMLEACMDMQLELQRSIRQEVSAALNRSAVSSGTNELVSSDESKWECVRKGLCCICCESNIDSLLYRCGHLCTCSKCANELLQSKRKCPMCQAPVVEVIRAYSIL 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241689g00025 523 Pfam Zinc finger, C3HC4 type (RING finger) 468 515 - -
Stsc241689g00025 523 MobiDBLite consensus disorder prediction 1 29 - -
Stsc241689g00025 523 MobiDBLite consensus disorder prediction 142 164 - -
Stsc241689g00025 523 SUPERFAMILY RING/U-box 470 516 - -
Stsc241689g00025 523 MobiDBLite consensus disorder prediction 47 71 - -
Stsc241689g00025 523 MobiDBLite consensus disorder prediction 1 71 - -
Stsc241689g00025 523 CDD mRING-HC-C3HC5_NEU1 471 520 - -
Stsc241689g00025 523 MobiDBLite consensus disorder prediction 353 387 - -
Stsc241689g00025 523 Coils Coil 400 427 - -
Stsc241689g00025 523 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 105 523 - -
Stsc241689g00025 523 MobiDBLite consensus disorder prediction 185 219 - -
Stsc241689g00025 523 ProSiteProfiles Zinc finger RING-type profile. 471 510 IPR001841 -
Stsc241689g00025 523 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 448 521 IPR013083 -
Stsc241689g00025 523 MobiDBLite consensus disorder prediction 143 164 - -
Stsc241689g00025 523 MobiDBLite consensus disorder prediction 179 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241689g00025 Stsc-Chr241689 160480 164449 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241689g00025 471 517 C3H Transcription Factor Family AT3G06140 42.553 7.60e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241689g00025 - - gmx:100801329 652.899