Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241689g00024 ATGGCTATTGCTGGTCTGCACAATGTATCTGTACTCGAATCTTCTTTCCTCAGGGATTCCCATTCCCAGTCATCCAGCAGGCGGGGAGATGGAAGAAGGGGAGGAACCCGGTCATCCACACTTTTGCAAATGTGGCGAGAGCTTGAAGAGGAACACATGGTGAATCAGATCCAAGGAAGGCATGGTGAAGTACTACTTGAACAAAGGAGTGACGGGTTGACTTCTGATCTCTCACAGGCAGATTCCCCAGGTAGCCATGAGAGAGGACAGGATCATATGCTTGAAGATGCAGTTTTGGGTGACACTGAGTCTGAAACATGGTCACAGACACAAAGTCAGAATGAATCCCATTACGATCATGAGGATTTAAACAACTCCAGCTGTGAAAACTCCTCTGATTTGGGAGAAGTTGAAAGGGAAAGAGTGAGGCAAATTTTTAGAGAATGGATGAGTAGTGGTGCTGGGGATCATGGATCAAACATTTCCCGGAGAAATAACAGTTCAAGGGGAGAATGGCTTGGTGAAACTGAGCAGGAAAGGGTGAGAATTATAAGGGAGTGGGTACAAATGAGTAGCCGGCAGAGGGGCGTTTCTTCTGGGGAAAACAGGGAAGAGCAATCTGCTGAGATTGGTACACAAATTGAACGTGTACGTGACGGCTTTGTCATTAACCAAGGTCAGGGACAGACAGAGCATTTTCGAAGGGGCAACCGTAAATTATGTGGACGACAGGTTATGCTTGATATGCTGAAGAAGGCTGAGATGGACAGGCAAAGAGAAATTCAAGAGTTGTTGGACCATCGGGCAGTATCTCATTTCCCCCACCGTAATCGCATTCAGGCATTGCTTAGAGGCAGGTTCCTGAGAAATGATAGATCTGTTGATAATAACAGGTCCACTTCTGTTGCTGAAAGTGAATTAGGTTTATTGAGGCAAAGACAAACTGTATCAGGCCTAAGGGAAGGATTCTTCTCTAGAAAGGACAAAACTGGTTGCAGTCAAGCAACTGGCAACGTATCTGATATGTCGTCTAACAGCGATATTGAATTTAATGCAATTGAACAAACTGCTGCTAGCAGTTCATATGTGGTCCCAACTGTGGATTCTGAACGGTCTGAATCTAATACCAGAAGAAATGATGGACTTGAGATGATGGGATGCCAGAATTGTTTGCAGGAAACAACATCTGAGAATCCAGATCAACATGACTCTACTGGTCATGTAGAAGGACCTCAGTTACAGAGTTTACAAGTTGAACCAGTAAATCGTCTATCATCCAGTGTGGCTGTTGAAAGAAGAGATAGCACTGGGCAAATTGCTGACGTGAACCTTGTGATGTCAGTTGAAGATACTGCTAGTGATCACATGCAGCGAAGTTTGCAAACTGAAGATCCAATTCAGAGTGCTATGCAGGAATTCAGTGAGGCACACAATGATCAACTTCGAGTGGGTGATATAAATAATGGTGAAAATGATTCATCAAGCCACATTAACCCCATGGAGGAAAATAGTGTTGATATGAATCAGAACGAATCTGCTGCTCTGGTAGGTGAACCTCTGGAAGAAGGTACTGAAAATGGACGAAGTGGCTGGAATCAGAGTAACCATGAATGGAGAAATAGCACTGACGAAGGTATAGATGATAATCAATTCAGCAGTACATCATTGCCGTGGCCTGAAAATGGATATGGAAATGAGGATGGAGAAAACTCTCGACTGCAAGAAGGTCCTGAAGTCTGGCAAGAGGATGGTGGCTTCCAAGAGGCTGTAGAAAATTGGTTGGGGGCTCCTTCTGATCTTGGAAGTGCTCCAGTTGGCAGGGTTCATGGATTTTATTTTCCAGATGATGACAATGTATACAGTGTTGAACTCAGGGAACTGCTTAATAGGAGAAGTGTCTCCAACCTCCTTCGTAGCAGTTTCCGTGATAGCCTTGACCAGTTGATACAATCGTATGTTGTAAGACAAGGCCATAATCAGATGGAGTGGGAGCTACAAGAAACAACCCCTTCTACTGCCTCTGTTGAACATGACCTTGAACAGCAGAGTAGGGATCAGATTGTTGGTCAGGAGGGTACTGTTAATAGTCCACTTGACCTACCTTCTTTACCTATCCCTCCTCCTCTGCCTAATTGGGACCGGCACGCTCGCCGTGACAGCTGGTCACAGTCACAGAGTGACATGAATAATCAGCATCTAGGAGGAATTGATTGGGAGGTTGTCAATGACTTGAGAATTGACATGGCTAGATTACAGCAAAGGATGAACAATATGCAAAGAATGCTGGAGGCTTGTATGGATATGCAGCTGGAGTTGCAGCGTTCCATAAGACAGGAAGTTTCTGCTGCCCTAAATCGTTCGGCTGTTTCATCAGGAACAAATGAGTTGGTGTCATCAGATGAATCTAAATGGGAATGTGTGAGGAAAGGGCTTTGCTGTATATGCTGTGAAAGCAATATTGATTCTTTGTTGTACAGATGTGGGCACTTGTGTACATGTTCTAAATGTGCCAATGAGTTGCTTCAAAGTAAAAGGAAGTGCCCGATGTGTCAAGCCCCCGTCGTGGAGGTTATACGTGCTTATTCTATACTATAG 2595 0.4455 MAIAGLHNVSVLESSFLRDSHSQSSSRRGDGRRGGTRSSTLLQMWRELEEEHMVNQIQGRHGEVLLEQRSDGLTSDLSQADSPGSHERGQDHMLEDAVLGDTESETWSQTQSQNESHYDHEDLNNSSCENSSDLGEVERERVRQIFREWMSSGAGDHGSNISRRNNSSRGEWLGETEQERVRIIREWVQMSSRQRGVSSGENREEQSAEIGTQIERVRDGFVINQGQGQTEHFRRGNRKLCGRQVMLDMLKKAEMDRQREIQELLDHRAVSHFPHRNRIQALLRGRFLRNDRSVDNNRSTSVAESELGLLRQRQTVSGLREGFFSRKDKTGCSQATGNVSDMSSNSDIEFNAIEQTAASSSYVVPTVDSERSESNTRRNDGLEMMGCQNCLQETTSENPDQHDSTGHVEGPQLQSLQVEPVNRLSSSVAVERRDSTGQIADVNLVMSVEDTASDHMQRSLQTEDPIQSAMQEFSEAHNDQLRVGDINNGENDSSSHINPMEENSVDMNQNESAALVGEPLEEGTENGRSGWNQSNHEWRNSTDEGIDDNQFSSTSLPWPENGYGNEDGENSRLQEGPEVWQEDGGFQEAVENWLGAPSDLGSAPVGRVHGFYFPDDDNVYSVELRELLNRRSVSNLLRSSFRDSLDQLIQSYVVRQGHNQMEWELQETTPSTASVEHDLEQQSRDQIVGQEGTVNSPLDLPSLPIPPPLPNWDRHARRDSWSQSQSDMNNQHLGGIDWEVVNDLRIDMARLQQRMNNMQRMLEACMDMQLELQRSIRQEVSAALNRSAVSSGTNELVSSDESKWECVRKGLCCICCESNIDSLLYRCGHLCTCSKCANELLQSKRKCPMCQAPVVEVIRAYSIL 864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241689g00024 864 MobiDBLite consensus disorder prediction 361 381 - -
Stsc241689g00024 864 SUPERFAMILY RING/U-box 811 857 - -
Stsc241689g00024 864 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 449 864 - -
Stsc241689g00024 864 MobiDBLite consensus disorder prediction 520 578 - -
Stsc241689g00024 864 MobiDBLite consensus disorder prediction 694 728 - -
Stsc241689g00024 864 MobiDBLite consensus disorder prediction 101 137 - -
Stsc241689g00024 864 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 789 862 IPR013083 -
Stsc241689g00024 864 MobiDBLite consensus disorder prediction 484 505 - -
Stsc241689g00024 864 Pfam Zinc finger, C3HC4 type (RING finger) 809 856 - -
Stsc241689g00024 864 CDD mRING-HC-C3HC5_NEU1 812 861 - -
Stsc241689g00024 864 MobiDBLite consensus disorder prediction 393 413 - -
Stsc241689g00024 864 MobiDBLite consensus disorder prediction 149 168 - -
Stsc241689g00024 864 MobiDBLite consensus disorder prediction 483 505 - -
Stsc241689g00024 864 Coils Coil 741 768 - -
Stsc241689g00024 864 ProSiteProfiles Zinc finger RING-type profile. 812 851 IPR001841 -
Stsc241689g00024 864 MobiDBLite consensus disorder prediction 16 37 - -
Stsc241689g00024 864 MobiDBLite consensus disorder prediction 526 560 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241689g00024 Stsc-Chr241689 160480 164449 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241689g00024 812 858 C3H Transcription Factor Family AT3G06140 42.553 1.32e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241689g00024 - - gmx:100801329 1153.27