Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241689g00023 ATGGAGAACTGTGCAGATTCGGAACAGTTCGTGCTGCGGTCTAGTATCCAGACAGGTTTTAAGAGAGAGTTTGAATTCGCCATGAAAGCTCAATCCGAAATTTGTTGGTCATTGGGCCGGACTAGGGCTTCCAAGCATGGGAATGTGGTTCAGGTTGTGAACCGCCGAGTAAAAAAGCGGTCCAAGAAGTCAAGTTCAACAAAAGTGAACAAGAGTGAGTCGAAAAGTAGGGTGGTGGAAAGCGTAGATGGTGGTGGTAGAGCTGATGTTATGAGTGAAAAGGAGGCAAAGAGTGATGTGGATGTGGAGGAACTAAAGAATCTACATGGGCAATCTATTGGGAAGGTGGGGGCTTTGGATGATGGTAAGGAACCAAAGAATGATGGTAATGTGGTGGTGGATGAAAAGGGGAAGGTTGGTTGTGAAGGTGAGGCAAAGGAGGGTGGTGAGGTATGCTTTTCGAAGGAAGATGGTGTTGTTGGTGGGCCAACACCGATTTCAGTTATAGCTGATAGTGGTGATAGTGTGAAAGGTTCTTTTGTTTCTGTGGAGAAGCCATTTAGAAGGTTTACTAAGTCTCTACTAAAGATAAAGTTGGAGGATGATGCTACTGGCGCAAAGGGTGGGTTTGATAAGGGAAATGATGATGCTGAAGCTGTTGAAGTTGGTGGTAATAATAAGAAGCATGCTAATGATCGTGGCAAGGATGTTGAGGAGAAAATTAAGGATGGTGCATTGGTTACTATGTCCAAGGCTAGTACTAAGAGATGCCCAACGAGTCTGAAAGAGCTTCTAGCCACAAGAATTCTTGAGGGTTTGCCAGCAAGGAAGGCTGGAGGAACAAGGCTTCCGGGAGTGATTAGTGGTGATGGGATTGTGTGCCATTGTGAACACTGCCATGGTGTTGAGGTTGTGAAGCCTGCGTTGTTTGAGCTTCATGCTAGCAGTTCAAACAAGTGCCCTCCAGAGTATATATACCTTGAGAATGGGAGTACTCTTCAAGATATGATGAATACATGTTTGAACATACCATTAGAAACCTTGGAAGAAGCTGTACAAAAAGTCATTGGAGGCTTCACTATAAAGAAATCTACCTTTTGTTTTAACTGTAGAGATGCCCATGTTGTGTCGAGATTATTATGCAATGTATGCATGGAGTTGAAGAAATGCTTTCCTAACCCCTCTACTCAAACAAATGACCCTGGCAATTGCAATGTTTCCCTTGCAGTTCAATCCAGATACCCAGAACCTATTGTGGTTCAAAAGTCAATAAATAATGGAATGAAGCATAGCACATCTCGTGATAGCAGTGAGGGAAAAATAACTAGGAAGGATCTACACATGCATAAGTTGATCTTTGAAGCAGATGTGTTGCCTGATGGAACAAAAGTAGCATACTATGTTCGTGGAAAGCGACTATTGGATGGTTATAAGCACGGTTTTGGAATAGTTTGTAGCTGTTGTGACAAAGAGATTAGTCCCTCCCAGTTTGAAGCTCATGCCGGTTGGGCATCACGTCGAAAACCTTACCTCCACATATATACATCTAATGGAGTCTCCCTCCATGAGCTGTCCATCAATTATCTAAAAGAACGGAAGTCTTCCTCCGGTGATAGTGATGACCTCTGCAGTATGTGTTTTCATGGAGGGGATCTTTTCTGTTGTAATGGATGCCCAAGAGCATTTCACATTGATTGTGTTCCTCTCTCTTCTATTCCAACTGGTACCTGGTATTGTAAATACTGTCATAATGTCTTTCAGAAAGACAAATATGTGGAGCGTAATGCAAATGCTTTGGCAGCTGGGAGGATTGCAGGTGTTGATCCTTTAGCAGAGATACAAGAAAGGTGCATTCGCATTGTTAAAACGCACCAAGTTCATCATGAGGGATGCGTACTTTGTAGGAAACAATATTTTAGCAAAATCTTTAGTCTCCAAACTATGATGATTTGTGATCAGTGTGAGAAGGAATATCATGTTGGGTGTATGAAGGACCATAACATACAGAACCTAGAGGCATTGCCAGAAGGGAATTGGTTCTGCTGCTCAGAGTGCAATGAAGTTCACACTGCTTTGGGGAATTTAGTGGTTGGTGAGGAAGAGAATCTTCCAGATTCCCTCCTTAGCTTGATCGAAAAGAAGCATGCAGAAAAAGGTTTAGGAATTGAGGCTGGTCTTGACATTAAATGCAAGGTTCTGAACTGGAATTGTATTGCTTCTGACAATACCAGAAAATTGCTTTCAAAGGCTGTTGCTATCCTCCATGAGCGGTTTGGTCCAATAAATTCTGATTCAAGAGCTGATTTCATTCCAGCAATGATTTATGGGAGGAAGATTGGGCATTATGATTTTTGCGGAACGTACTGTGCAATTCTCACTGTCAACCAAGTAATTGCTTCTGTTGGAATATTTCGCGTCTTCGGGCACGAAGTGGCAGAGCTTCCCTTAGTGGCAACGCCGATAGACTGCCAAGGACAAGGTTACTTCCAGTGCCTCTTTTCTTGCATTGAGAGGTTACTTGCCTCTTTAAAAGTGAAGCATTTAGTCCTACCAGCCGCGGAAGAAGCTGAACCAATGTGGATCAATAAATTTGGGTTTACAAGGGTAGACCAAGATGAGATAAACGATTATTGGAGACGTCTCCGATTGATGATGTTTCAAGACACCCCCTTACTGCGGAAACCGGTTCCTACACTCTCAAGTACTTAG 2709 0.4297 MENCADSEQFVLRSSIQTGFKREFEFAMKAQSEICWSLGRTRASKHGNVVQVVNRRVKKRSKKSSSTKVNKSESKSRVVESVDGGGRADVMSEKEAKSDVDVEELKNLHGQSIGKVGALDDGKEPKNDGNVVVDEKGKVGCEGEAKEGGEVCFSKEDGVVGGPTPISVIADSGDSVKGSFVSVEKPFRRFTKSLLKIKLEDDATGAKGGFDKGNDDAEAVEVGGNNKKHANDRGKDVEEKIKDGALVTMSKASTKRCPTSLKELLATRILEGLPARKAGGTRLPGVISGDGIVCHCEHCHGVEVVKPALFELHASSSNKCPPEYIYLENGSTLQDMMNTCLNIPLETLEEAVQKVIGGFTIKKSTFCFNCRDAHVVSRLLCNVCMELKKCFPNPSTQTNDPGNCNVSLAVQSRYPEPIVVQKSINNGMKHSTSRDSSEGKITRKDLHMHKLIFEADVLPDGTKVAYYVRGKRLLDGYKHGFGIVCSCCDKEISPSQFEAHAGWASRRKPYLHIYTSNGVSLHELSINYLKERKSSSGDSDDLCSMCFHGGDLFCCNGCPRAFHIDCVPLSSIPTGTWYCKYCHNVFQKDKYVERNANALAAGRIAGVDPLAEIQERCIRIVKTHQVHHEGCVLCRKQYFSKIFSLQTMMICDQCEKEYHVGCMKDHNIQNLEALPEGNWFCCSECNEVHTALGNLVVGEEENLPDSLLSLIEKKHAEKGLGIEAGLDIKCKVLNWNCIASDNTRKLLSKAVAILHERFGPINSDSRADFIPAMIYGRKIGHYDFCGTYCAILTVNQVIASVGIFRVFGHEVAELPLVATPIDCQGQGYFQCLFSCIERLLASLKVKHLVLPAAEEAEPMWINKFGFTRVDQDEINDYWRRLRLMMFQDTPLLRKPVPTLSST 902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241689g00023 902 CDD PHD1_AIRE 542 582 - -
Stsc241689g00023 902 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 626 688 IPR013083 -
Stsc241689g00023 902 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 777 877 IPR016181 -
Stsc241689g00023 902 ProSiteProfiles Zinc finger PHD-type profile. 540 585 IPR019787 -
Stsc241689g00023 902 Pfam Tify domain binding domain 477 525 IPR032308 -
Stsc241689g00023 902 Pfam Tify domain binding domain 285 340 IPR032308 -
Stsc241689g00023 902 SUPERFAMILY FYVE/PHD zinc finger 626 685 IPR011011 -
Stsc241689g00023 902 MobiDBLite consensus disorder prediction 57 99 - -
Stsc241689g00023 902 SUPERFAMILY FYVE/PHD zinc finger 528 583 IPR011011 -
Stsc241689g00023 902 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 528 606 IPR013083 -
Stsc241689g00023 902 MobiDBLite consensus disorder prediction 66 99 - -
Stsc241689g00023 902 SMART PHD_3 542 583 IPR001965 -
Stsc241689g00023 902 SMART PHD_3 630 686 IPR001965 -
Stsc241689g00023 902 Gene3D - 732 889 - -
Stsc241689g00023 902 ProSitePatterns Zinc finger PHD-type signature. 543 582 IPR019786 -
Stsc241689g00023 902 PANTHER AUTOIMMUNE REGULATOR 62 896 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241689g00023 Stsc-Chr241689 135306 140218 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241689g00023 440 896 PHD Transcription Factor Family AT2G36720 48.913 1.33e-155 481
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241689g00023 - - aprc:113859749 982.245