Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241689g00019 ATGGCGGCTGCATCTGATGAAGGTGGATTCCCAGCACCACCACCACCTGCTATTATTTCATCATCATCAGTTCATGGATCTTCATCATCATCATCATCATCATCATCATCCACCATGTATCACTATCTCTCAGTTCTCAATCATAAAATTAACGAGTTGCAGTCACTTGTTGGCATTGTAGCCTCTCCTAATCCCCACTATCACTCATCAATTAATTCATCTTCTTCTTCTTCCTATTCCATGGCCTTATCCACCATGACCTCCACAATCCAGGATATCATAGTTGCTTCTTCTTCAATCAGACTCACCTTCCAACAACACATCAATAATCATCCATCAGGAGGTAATAGTGTTGCTACAGAAGAAGAAGTAGAAGAAGAAACACTCCGTTGGTTTTCTTCTGAACCCTTCAACAATAATACTACTATTTTTTGTGATAATAACCCTAATAATAAGGATCATGGAGACGAAGACAAAGACAATGAAGATAAAGAAGACGAAGAAGAGGATATAATTGAGTTGAATGCTGCTGATTTGTTAGCAAGCTACACACACTTCTGCCAAATCTGTGGCAAAGGGTTTAAGCGCGAAGCGAATCTAAGGATGCACATGAGAGCTCATGGGGATGAATTCAAGACAAATACAGCCTTAAAGAATAACAGCAATAAGGGGATGATGTTATTGAAGAAGAAGAAGAAGAAGTATTCATGCCCTGAAGAAGGGTGCAGATGGAACAAGAATCACGCGAGGTTTCAGGCGCTGAAATCAATGGTGTGTGTGAAGAATCACTACAAGAGAAGCCATTGTCCCAAGATGTATGTTTGCAAGAGGTGCAACAGCAAGAACTTCTCTCTGCTCTCTGATTTGAGGACTCATGAGAAGCACTGTGGTGATCCCAATAAATGGCTGTGTTCTTGTGGAACCACTTTCTCCAGGAAAGACAAGCTCATTGGACATCTTGCTTTGTTTCATGGCCACTCTCCAGCTAATAATGCTACCTCCATTGCTGCTACTCCTCAAAGAGCATAG 1029 0.414 MAAASDEGGFPAPPPPAIISSSSVHGSSSSSSSSSSSTMYHYLSVLNHKINELQSLVGIVASPNPHYHSSINSSSSSSYSMALSTMTSTIQDIIVASSSIRLTFQQHINNHPSGGNSVATEEEVEEETLRWFSSEPFNNNTTIFCDNNPNNKDHGDEDKDNEDKEDEEEDIIELNAADLLASYTHFCQICGKGFKREANLRMHMRAHGDEFKTNTALKNNSNKGMMLLKKKKKKYSCPEEGCRWNKNHARFQALKSMVCVKNHYKRSHCPKMYVCKRCNSKNFSLLSDLRTHEKHCGDPNKWLCSCGTTFSRKDKLIGHLALFHGHSPANNATSIAATPQRA 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241689g00019 342 ProSitePatterns Zinc finger C2H2 type domain signature. 187 207 IPR013087 -
Stsc241689g00019 342 ProSiteProfiles Zinc finger C2H2 type domain profile. 185 212 IPR013087 -
Stsc241689g00019 342 Gene3D Classic Zinc Finger 183 258 - -
Stsc241689g00019 342 FunFam Zinc finger 45-like 184 208 - -
Stsc241689g00019 342 SMART c2h2final6 235 268 IPR013087 -
Stsc241689g00019 342 SMART c2h2final6 302 324 IPR013087 -
Stsc241689g00019 342 SMART c2h2final6 185 207 IPR013087 -
Stsc241689g00019 342 SMART c2h2final6 273 295 IPR013087 -
Stsc241689g00019 342 MobiDBLite consensus disorder prediction 1 34 - -
Stsc241689g00019 342 SUPERFAMILY beta-beta-alpha zinc fingers 184 210 IPR036236 -
Stsc241689g00019 342 MobiDBLite consensus disorder prediction 20 34 - -
Stsc241689g00019 342 MobiDBLite consensus disorder prediction 140 168 - -
Stsc241689g00019 342 Pfam C2H2-type zinc finger 185 207 - -
Stsc241689g00019 342 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 27 332 IPR044300 GO:0010044|GO:0010447
Stsc241689g00019 342 Gene3D Classic Zinc Finger 271 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241689g00019 Stsc-Chr241689 122931 124052 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241689g00019 26 333 C2H2 Transcription Factor Family AT5G22890 46.084 3.94e-90 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc241689g00019 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241689g00019 - - adu:107476493 398.282