Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241689g00017 ATGGATTACAAGGAAGATGTGTCCAACACTAATGACAATTATAACTGTCATAATGTTGTTCATCATGATGCTACACATCATATAGCAAAGGGGAAAAGAACCAAGAGGTTGAGGCTTTTGTGTGCCGGTGGTGGCGCTACTGTCGTGGTGGCCGCGGCGGGGACGGCGTCTAGCTGTTCAAGCCCTTCCGGGGATCATGGAAGTGGAGGCAGCTGCGGCGATGATCGCGGCTCGTTTTCGATTTCTTCCACCACGAATCAAGAAGAAGAAGACATGGCTAATTGCTTGATTCTTCTTGCTCAAGGAGGAGGAAGGGGTGGTGGTGGAGATTCTCATCATCATCATCAAGAACAGGCTCATCCGCCACCGCCACCGCCACCGCCGCCACAAGTCGATGATCAGCAAGAAGAAGATCACGATTGTGGTAACAACAAGAAGATTATTGAAATCAAGAGTAGGAAATTCTCCGAGATTGAAACCGCCACCGCAAACAAGAAGGTTGTTGGTTTCTATATTTATGAGTGCAAGACTTGTAACCGAACCTTCCCTTCCTTTCAAGCCTTGGGAGGTCATAGGGCCAGTCACAAGAAGCCTAAGCTCACAACAATCCCTGCTGACGAGAAGAAACCGCCGCCACCGCCGCCACCTCCACCGTCTCCGCCACCACCACCGTCCCAACTTATGATTGAAAGTGTCCCTCCATACAAAAATAATAATCCAATAATTTCTCTACAATTTGAGAGTGGGCAAAAAGGTAATTTCCATAGGAACAACAACAACAAGGCCAACAAGATTCATGAGTGCTCCATATGTGGCTCCGAATTCACATCCGGCCAAGCATTAGGTGGACACATGAGGAGGCATAGGGCTACCGCGGCTGCGGCCGCCAATAATACCACTCAACCCATTGGACTGAGTGGTATTCAGGCTACTTCTGCCGTTGGAATGACGGCAGAAGTTCAGCCTCGCAACATTCTAGAATTGGATCTTAATCTTCCGGCCCCAGAGGAGGACCTCCGGGAGCCGAAGTTTCAGTTCGCTACGGCGGCAACTAAGAAATCTATGGTGCTCTCAGCTGCTCCGGCTTTGGTGGACTGTCATTATTAG 1107 0.495 MDYKEDVSNTNDNYNCHNVVHHDATHHIAKGKRTKRLRLLCAGGGATVVVAAAGTASSCSSPSGDHGSGGSCGDDRGSFSISSTTNQEEEDMANCLILLAQGGGRGGGGDSHHHHQEQAHPPPPPPPPPQVDDQQEEDHDCGNNKKIIEIKSRKFSEIETATANKKVVGFYIYECKTCNRTFPSFQALGGHRASHKKPKLTTIPADEKKPPPPPPPPPSPPPPPSQLMIESVPPYKNNNPIISLQFESGQKGNFHRNNNNKANKIHECSICGSEFTSGQALGGHMRRHRATAAAAANNTTQPIGLSGIQATSAVGMTAEVQPRNILELDLNLPAPEEDLREPKFQFATAATKKSMVLSAAPALVDCHY 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241689g00017 368 MobiDBLite consensus disorder prediction 103 140 - -
Stsc241689g00017 368 MobiDBLite consensus disorder prediction 189 234 - -
Stsc241689g00017 368 ProSiteProfiles Zinc finger C2H2 type domain profile. 266 293 IPR013087 -
Stsc241689g00017 368 SUPERFAMILY beta-beta-alpha zinc fingers 172 288 IPR036236 -
Stsc241689g00017 368 ProSitePatterns Zinc finger C2H2 type domain signature. 268 288 IPR013087 -
Stsc241689g00017 368 PANTHER ZINC FINGER PROTEIN ZAT5 78 351 - -
Stsc241689g00017 368 MobiDBLite consensus disorder prediction 56 86 - -
Stsc241689g00017 368 SMART c2h2final6 266 288 IPR013087 -
Stsc241689g00017 368 SMART c2h2final6 173 195 IPR013087 -
Stsc241689g00017 368 ProSitePatterns Zinc finger C2H2 type domain signature. 175 195 IPR013087 -
Stsc241689g00017 368 MobiDBLite consensus disorder prediction 205 229 - -
Stsc241689g00017 368 ProSiteProfiles Zinc finger C2H2 type domain profile. 173 200 IPR013087 -
Stsc241689g00017 368 Pfam C2H2-type zinc finger 173 198 - -
Stsc241689g00017 368 Pfam C2H2-type zinc finger 266 290 - -
Stsc241689g00017 368 Gene3D Classic Zinc Finger 248 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241689g00017 Stsc-Chr241689 110511 111878 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241689g00017 27 368 C2H2 Transcription Factor Family AT2G28200 41.408 9.41e-59 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc241689g00017 zf-C2H2_6 3.1e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241689g00017 - - aip:107629278 410.609