Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241689g00012 ATGTCGCAGGAGAGGGGCACGCCTGTGCCGTTCTCGTTACTGGCGTCGGCGCTTGACATGATTTCTAAGGAGTCTGGGACAATCGCGACTACCGATATCGCGTGCAATTTGATGCAAACTGTGATATACTCTACCCCTGAGGATCTTCTGCCGATGATGTATCTCTTGCGGAAGAAGGTTGCTCCGGCGCACGAAGGCGTGGAAATAGGAATTGGTGATTCTTCAATTGTCAAGGCACTTGGAATTGGTGATTCTTCAATTGTCAAGGCACTTGCTGAGGCAAATGGAACATCTGAATCCGAAATCAAGAAACTGAATAAGGAAGAGGGTGATCTGGGTTTAGTTGCCAAGAAATGCCGTTCATCTCAGTCAAAGATTCGGATGCCTGACCCTCTGACTATTAGGAAGGTTTTTGACACCTTCCGTCTTATTGCTAAGGGAGAGTTGCGGATTGGTATGGCTGATCAAACACTCTTAGCTGCATTAGCCCAGGCAGCAGTATATACTGAAGAACATTCTAAACCACCTGCTGATATTAAGTCTCCTGTGGAAGAAGCTGTAAAAATTGTCAAACAAGCCTATTCTGTTTTTCCTGTTTATGACAAAATAGTATCTGCGCTGCTTACGCATGGTGTATGGAAACTTCCATCAACATGTAATTTCACTCCTGGTATTCCAGTTGGACCTATGCTGTCAAAACGAATGAAGAGTTTCTCTGAGATTCTAAATACAGTAAAGGATGTGGAGTTTACTTGCGAATACAAGTATGATGGACAGCGTGCCCAGCTGACACTTTCATGTTCAAATTTTCTATTGGAAATACACGGCAAAGTATTATATATTCATATATGTGCAATAACGTTAACTTTATTGAGACAGATACATTACATGGAAAATGGTTCAGTTGAGATTTATAGTAGAAATGCCAAGCGGAATACTGGGAAGTATCCTGATGTTGTCGCTGCAATTTCAAGGTGA 978 0.4254 MSQERGTPVPFSLLASALDMISKESGTIATTDIACNLMQTVIYSTPEDLLPMMYLLRKKVAPAHEGVEIGIGDSSIVKALGIGDSSIVKALAEANGTSESEIKKLNKEEGDLGLVAKKCRSSQSKIRMPDPLTIRKVFDTFRLIAKGELRIGMADQTLLAALAQAAVYTEEHSKPPADIKSPVEEAVKIVKQAYSVFPVYDKIVSALLTHGVWKLPSTCNFTPGIPVGPMLSKRMKSFSEILNTVKDVEFTCEYKYDGQRAQLTLSCSNFLLEIHGKVLYIHICAITLTLLRQIHYMENGSVEIYSRNAKRNTGKYPDVVAAISR 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241689g00012 325 Gene3D DNA ligase/mRNA capping enzyme 229 325 - -
Stsc241689g00012 325 Gene3D - 1 145 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Stsc241689g00012 325 Gene3D - 146 228 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Stsc241689g00012 325 Pfam DNA ligase N terminus 10 80 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Stsc241689g00012 325 Pfam DNA ligase N terminus 80 146 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Stsc241689g00012 325 Coils Coil 88 108 - -
Stsc241689g00012 325 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 4 81 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Stsc241689g00012 325 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 80 219 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Stsc241689g00012 325 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 293 324 - -
Stsc241689g00012 325 Pfam ATP dependent DNA ligase domain 229 265 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Stsc241689g00012 325 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 191 323 - -
Stsc241689g00012 325 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 253 261 IPR016059 GO:0003909
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241689g00012 Stsc-Chr241689 78213 80301 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241689g00012 4 325 Core DNA Replication Machinery Family AT1G08130 50.281 2.77e-112 342
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241689g00012 K10747 - gmx:100783155 353.599