Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241689g00011 ATGAACAGGGTAAAGAAATCAACTGTATCGACATTTGTCCTTGATTGTGAAATTGTTGGATATGATCGTGAAAAAAAGACAATCCGTTCTTTCCAGGAACTTAGTGGTCGGCTTCATAAAAATGTATCTATGGATAATATAAAGGTTGACGTCTGCATATTTGCTTTTGATATACTGTATCTTAATGGCCAGTCACTTCTTCAGGATAACCTGAAAATCCGTAGAGAGCATCTTTATGCTTCTTTTGAAGAAGAAACAGGAGTATTTGAGTATGCAACAGCAATAACAACAAATGACATCGAGGAAATGCAGGAATTTCTGGACCAAGCTGTTGCTTCAAGCTGTGACTCCTGTGAGGGATTAATCATTAAAACGTTAGTTGAAGATTCTACATATGAACCTTCCAATCGGTCAAACAATTGGCTAAAACTGAAGAAAGATTATCTGAAAAACATAGGGGACTCACTAGATTTGGTACCTATAGCCGCATTCCACGGACGTGGGAAACGTTTCCCACGTCCAGGTGATCATAAAGAGTGTATGGTGCTTTTCTTCTTGCTTGCTATGACTGCAATAATGAAGAATTTCAAAGTATTTGTAGGACTGGGTATATCTCTTAGATTCCCTCGGTTTGTTCGACTTCGACCTGACAAAGAGCCTGAGGAGGCCACATCATCTGAGCAGGTAAAGTATAATCTTCACAAGTTCTTGCATAAACTTGTAGCAGCAAAGTTGGGTGCATTAGTTCAATGA 753 0.3891 MNRVKKSTVSTFVLDCEIVGYDREKKTIRSFQELSGRLHKNVSMDNIKVDVCIFAFDILYLNGQSLLQDNLKIRREHLYASFEEETGVFEYATAITTNDIEEMQEFLDQAVASSCDSCEGLIIKTLVEDSTYEPSNRSNNWLKLKKDYLKNIGDSLDLVPIAAFHGRGKRFPRPGDHKECMVLFFLLAMTAIMKNFKVFVGLGISLRFPRFVRLRPDKEPEEATSSEQVKYNLHKFLHKLVAAKLGALVQ 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241689g00011 250 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 5 150 - -
Stsc241689g00011 250 FunFam DNA ligase 1 92 - -
Stsc241689g00011 250 ProSitePatterns ATP-dependent DNA ligase signature 2. 119 145 IPR016059 GO:0003909
Stsc241689g00011 250 Gene3D DNA ligase/mRNA capping enzyme 1 147 - -
Stsc241689g00011 250 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 203 231 - -
Stsc241689g00011 250 Pfam ATP dependent DNA ligase domain 5 145 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Stsc241689g00011 250 CDD Adenylation_DNA_ligase_I_Euk 1 148 - -
Stsc241689g00011 250 SUPERFAMILY Nucleic acid-binding proteins 153 230 IPR012340 -
Stsc241689g00011 250 Gene3D - 176 239 IPR012340 -
Stsc241689g00011 250 ProSiteProfiles ATP-dependent DNA ligase family profile. 44 170 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241689g00011 Stsc-Chr241689 75882 78049 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241689g00011 203 238 Core DNA Replication Machinery Family AT1G08130 63.158 1.41e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241689g00011 K10747 - gmx:100803989 274.633