Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241689g00010 ATGTCCAAACCACCCTCTGCCTTCGACGCTCTCATGTCCGGCGCTCGCGCCGCCGCCGCTGCCAACAAGAAGAAATCCGAACAATCGCAGCAACCAACTGCATCTTCTCCTAAGAAAAGAAAACCCCCATCATCCACTCCCCCCACTCAAACCTCCACGCTAAACCCTAACGATCCCAAACCCTCCGAACCCGTTCCTACGCCGCCGACTGACCCACCCAAGCAGGAACCGGAGAAAGAAGAAGGTCCTCCTCCGACCAAGACTCGCCACGTGGCTTCTTCTTCGTCTTTCTTGCAGGAGCTGAAGGAGCGCGTTCCGCAGCTGAAGGCGAAGCCTCAGAAATTCGAACCTAGCTCAGTGGCATCTTGGGAGAAGGGCACGCCTGTGCCGTTCTCGTTACTGGCGTTGGCGCTTGACATGATTTCTAAGGAGTCTGGGAGAATCGCGAGTACAGATATTGCGTGCAATTTGATGAAGACTGTGATATACTCTACCCCTGAGGATCTTTTGCCTCTGATGTATCTCTTGGGGAAGAAGGTTGCTCCGGCGCACGAAGGCGTGGAAATGGGAATTGGTGAGTCTTCGATTGTCAAGGCACTTGCTGAGGCAACTGGAAGAACTGAATCCAAAATCAAGAAACTGTATAAGGAAGAGGGTGATCTGGGTTTAGTTGCCAAGAAATGCCGTTCATCTCAGTCTATGATGCGGAAGCCTGAGCCTCTCACTATTAGGAAGGTTTTCAGCACCTTCCGTCTTATTGCTCAGGAATCTGGAAAGGCTAGTCAAGAGAAGAAAAAGAATCATATAAAGGGACTTGTTGTTGCTGCAACCGACTGTGAACCTCAATATCTTATCGGTCTTCTGCAGGCAGCAGTATATACTGAAGAACATTCTAAACCACCTGCTGATATTAAGTCTCCTGTGGACGAAGCTGTAAATATTGTCAAACAAGCCTATTCTGTTGTTCCTGTTTATGACAAAATAGTATCTGCGCTGCTTACGTATGGTGTATGGAAACTTCCATCAACATGTAATTTCACTCCTGGTATTCCAGTTGGACCTATGCTGTCAAAAGCAACGAAGGGTTTCTCTGAGATTCTAAATACAGTAAAGGATGTGGAGTTTACTTGTGAATACAAGTATGATGGAGAGCGTGCCCAGATACATTACATGGAAAATGGTTCAGTTGAGATTTATAGTAGAAATGCCGAGCGGAATACTGGGAAGTATCCTGACGTTGTCGCTGCAATTTCAAGGGTAAAGAAATCAACTGTATCCTCATTTGTCCTTGATTGTGAAATAGTTGGATATGATCGTGAAAAACAGACGATCCGTTCTTTCCAGGATCTTAGTGGTCGGCCTCGTAAAAATGTATCTGTGGATGATATAAAGGTTAACGTCTGCATATTTGCTTTTGATATGCTGTATCTTAATGGCCGAGCACTTCTTCAGGATAACCTTAAAATCCGTAGAGAGCATCTTTATGCCTCCTTTGAAGAAGAAACTGGAGTTTTTCAGTATGCAACAGCAATAACATCAAATAACATCGAGGAAATACAGGAATTTCTCGACCAGGCTGTTGCTTCAAGCTGTGAGGGATTAATCATTAAAACATTAGACGAAGATTCTACATATGAACCTTCCAATCGGTCACAAAATTGGCTAAAACTGAAGAAAGATTATCTGAACACCATAGGGGACTCACTAGATTTGGTACCTATAGCCGCATTCCATGGACGTGGGAAACGTACAGGAGTGTATGGTGCTTTTCTTCTTGCTTGCTATGACTGCAATAATGAAGAATTTCAAAGTATTTGTAAGATAGGAACGGGATTTACTGAAAAAGACCTTGAAGAGCGTTCTACTAGTCTTCGTTCTAAAGTGATTCCCGGGCCAAAGTCATACTATCGGTATGGAGATACAATGAAGCCTGATGTCTGGTTTGAAGCTAGTGAGGTGTGGGAGGTGAAAGCTGCAGATCTGACCATTAGCCCGGTTCACCGTGCTGCAGTGGGCATAGTAGATTCAGATAAGGGCATATCTCTTAGATTCCCTCGGCTAGTTCGAGTTCGACCTGACAAAAAACCTGAAGAGGCCTCATCATCTGAGCAGGTTGCTGAGATGTATAATGCTCAATTTTCGACTCAAACACAAACAAACAAACAGGATGGCAGTGAAGATGAAGATGAATATGAAGATGTAGATAAGTGA 2211 0.4473 MSKPPSAFDALMSGARAAAAANKKKSEQSQQPTASSPKKRKPPSSTPPTQTSTLNPNDPKPSEPVPTPPTDPPKQEPEKEEGPPPTKTRHVASSSSFLQELKERVPQLKAKPQKFEPSSVASWEKGTPVPFSLLALALDMISKESGRIASTDIACNLMKTVIYSTPEDLLPLMYLLGKKVAPAHEGVEMGIGESSIVKALAEATGRTESKIKKLYKEEGDLGLVAKKCRSSQSMMRKPEPLTIRKVFSTFRLIAQESGKASQEKKKNHIKGLVVAATDCEPQYLIGLLQAAVYTEEHSKPPADIKSPVDEAVNIVKQAYSVVPVYDKIVSALLTYGVWKLPSTCNFTPGIPVGPMLSKATKGFSEILNTVKDVEFTCEYKYDGERAQIHYMENGSVEIYSRNAERNTGKYPDVVAAISRVKKSTVSSFVLDCEIVGYDREKQTIRSFQDLSGRPRKNVSVDDIKVNVCIFAFDMLYLNGRALLQDNLKIRREHLYASFEEETGVFQYATAITSNNIEEIQEFLDQAVASSCEGLIIKTLDEDSTYEPSNRSQNWLKLKKDYLNTIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDCNNEEFQSICKIGTGFTEKDLEERSTSLRSKVIPGPKSYYRYGDTMKPDVWFEASEVWEVKAADLTISPVHRAAVGIVDSDKGISLRFPRLVRVRPDKKPEEASSSEQVAEMYNAQFSTQTQTNKQDGSEDEDEYEDVDK 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241689g00010 736 Pfam ATP dependent DNA ligase domain 354 558 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Stsc241689g00010 736 MobiDBLite consensus disorder prediction 23 58 - -
Stsc241689g00010 736 Pfam DNA ligase N terminus 130 289 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Stsc241689g00010 736 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 24 729 - -
Stsc241689g00010 736 FunFam DNA ligase 383 508 - -
Stsc241689g00010 736 MobiDBLite consensus disorder prediction 1 98 - -
Stsc241689g00010 736 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 378 386 IPR016059 GO:0003909
Stsc241689g00010 736 Gene3D - 364 562 - -
Stsc241689g00010 736 ProSiteProfiles ATP-dependent DNA ligase family profile. 460 596 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Stsc241689g00010 736 Gene3D - 563 726 IPR012340 -
Stsc241689g00010 736 FunFam DNA ligase 563 722 - -
Stsc241689g00010 736 MobiDBLite consensus disorder prediction 692 736 - -
Stsc241689g00010 736 CDD Adenylation_DNA_ligase_I_Euk 343 561 - -
Stsc241689g00010 736 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 346 564 - -
Stsc241689g00010 736 Gene3D - 106 356 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Stsc241689g00010 736 SUPERFAMILY Nucleic acid-binding proteins 566 712 IPR012340 -
Stsc241689g00010 736 ProSitePatterns ATP-dependent DNA ligase signature 2. 532 558 IPR016059 GO:0003909
Stsc241689g00010 736 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 112 344 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Stsc241689g00010 736 CDD OBF_DNA_ligase_I 566 711 - -
Stsc241689g00010 736 Gene3D DNA ligase/mRNA capping enzyme 383 508 - -
Stsc241689g00010 736 NCBIfam ATP-dependent DNA ligase 188 709 IPR000977 GO:0003910|GO:0005524|GO:0071897
Stsc241689g00010 736 MobiDBLite consensus disorder prediction 703 721 - -
Stsc241689g00010 736 Pfam ATP dependent DNA ligase C terminal region 583 694 IPR012309 GO:0003910|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241689g00010 Stsc-Chr241689 62799 74823 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241689g00010 2 712 Core DNA Replication Machinery Family AT1G08130 63.058 0.0 936
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241689g00010 K10747 - gmx:100783155 1006.9