Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241689g00008 ATGAAGTTCCAGAAACCGAGCAAGATCCAAGCCATAAGCTTGCCGATGATACTCAACCCGCCGCACCGTGATTTGATCGCTCAGGCTCACAACGGTTCCGGCAAGACCACATGCTTTGTTTTAGGGATGCTTAGTCGTGTGGATCCTTCTATGCAGGCTCCTCAAGCTCTCTGCATTTGTCCAACGAGGGAGCTTGCAATTCAGAACACTGAAGTTCTCCGGAAGATGGGGAAGTACACAGGGATTAGCTCGGAGTGTGCCGTTCCGACGGATAGCAGGGATTCGATTCCAATTCAAAAACGAGCCCCAATCATGGCTCAGGTGGTTATTGGAACTCCTGGCACCATAAAGAAGTGGATTTCTTACAAGAAATTGGCTGTGACCAGATTGAAGATTCTTGTCTTTGATGAGGCTGATCAAATGCTTGCTGAGGATGGTTTTAAAGATGATTCCTTGAGGATAATGAAAGAAATAGAAAAATTCAATTCTAGCTGCCAGGTTCTTCTGTTTTCTGCTACATTCAATGAGACTGTCAAGAACTTTGTTGAGAGGACAGTTAAAAAGGATCATAATAAACTTTTAGTTAAGAAACAAGATCTTTCTTTAGATGCTGTGAAGCAATATAAAGTGCGCTGCCCTGATGAGCGGTCAAAGATTAAAGTGTATGACTTCATTTTTGGATTAGGAGAAAATGTAGGTCAAACAATTATTTTCGTGCGCACGAGACAGAGTGCAATAACGCTGCACAAGTCACTTGTTGGTGAGGGTTATGAAGTTAGTTCGATACAAGGTGCACTTGACCATGAACAGAGAGACAAAATTGTCAGAGAGTTTAGAGATGGTTTGACCCAAGTTCTTATATCAACAGATGTTCTTGCTCGAGGCTTTGATCAGCAACAGGTCAATTTGGTTATCAACTATGATCTCCCAATAAAACATACTGCTGAGTATACACGCGAATTTGAACCTGATTACGAGGTGTACTTGCACAGAGTTGGTAGGGCTGGACGATTTGGCCGCAAAGGGGCTGTGTTTAACCTGATATGTGATGAAAGGGATGAAAGGCTGATGTCAAAGATTGAGAACCATTTTAGTAACCGTGTATCAGAGGTACGCGGAAAAAGTGTTGAAGACTATAAAGCTGCTCTTAAGGAGGCCGGATTACTCCAATGA 1173 0.4288 MKFQKPSKIQAISLPMILNPPHRDLIAQAHNGSGKTTCFVLGMLSRVDPSMQAPQALCICPTRELAIQNTEVLRKMGKYTGISSECAVPTDSRDSIPIQKRAPIMAQVVIGTPGTIKKWISYKKLAVTRLKILVFDEADQMLAEDGFKDDSLRIMKEIEKFNSSCQVLLFSATFNETVKNFVERTVKKDHNKLLVKKQDLSLDAVKQYKVRCPDERSKIKVYDFIFGLGENVGQTIIFVRTRQSAITLHKSLVGEGYEVSSIQGALDHEQRDKIVREFRDGLTQVLISTDVLARGFDQQQVNLVINYDLPIKHTAEYTREFEPDYEVYLHRVGRAGRFGRKGAVFNLICDERDERLMSKIENHFSNRVSEVRGKSVEDYKAALKEAGLLQ 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241689g00008 390 Gene3D - 1 199 IPR027417 -
Stsc241689g00008 390 Gene3D - 202 383 IPR027417 -
Stsc241689g00008 390 CDD SF2_C_DEAD 205 348 - -
Stsc241689g00008 390 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 2 359 - -
Stsc241689g00008 390 Pfam DEAD/DEAH box helicase 8 180 IPR011545 GO:0003676|GO:0005524
Stsc241689g00008 390 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 54 357 IPR027417 -
Stsc241689g00008 390 Pfam Helicase conserved C-terminal domain 227 339 IPR001650 -
Stsc241689g00008 390 CDD DEADc_DDX19_DDX25 1 188 - -
Stsc241689g00008 390 SMART helicmild6 246 339 IPR001650 -
Stsc241689g00008 390 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 220 380 IPR001650 -
Stsc241689g00008 390 Coils Coil 389 390 - -
Stsc241689g00008 390 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 16 192 IPR014001 -
Stsc241689g00008 390 SMART ultradead3 2 208 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241689g00008 Stsc-Chr241689 31129 33423 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241689g00008 3 371 Eukaryotic Initiation Factors Gene Family AT1G72730 38.133 1.98e-67 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241689g00008 K18655 - qsa:O6P43_010208 622.083