Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241689g00002 ATGTTCAGCATAGGGGACTCACTAGATTTGGTACCTATAGCCGCATTCCACGGACGTGGGAAACGTACAGGAGTGTATGGTGCTTTTCTTCTTGCTTGCTATGACTACAATAATGAAGAATTTCAAAGTATTTGTAAGATAGGAACGGGATTTACTGAACAAGACCTTGAACTGCGTTCTGCTAGTCTTCGTTCTAAAGTGATTCCTGGGCCAAAGTATGAAGATACAATGAAGCCTGATGTCTGGTTTGAAGCTGGTGAGGTGTGGGAGGTGAAAGCTGCAGATCTGACCATTAGTCCTGTTCATCATGCTGCAGTGGGCATAGTAGATTCAGATAAGGGCATATCTCTTAGATTTTCTCGGCTAGTTCGAGTTCGACCTGACAAAAATCCTGAGGAGGCCTCATCATCTGAGCAGGATGACAGTGAAGATCGAGATGAAGATGTAGATAAGTGA 456 0.4386 MFSIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDYNNEEFQSICKIGTGFTEQDLELRSASLRSKVIPGPKYEDTMKPDVWFEAGEVWEVKAADLTISPVHHAAVGIVDSDKGISLRFSRLVRVRPDKNPEEASSSEQDDSEDRDEDVDK 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241689g00002 151 ProSiteProfiles ATP-dependent DNA ligase family profile. 1 35 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Stsc241689g00002 151 Pfam ATP dependent DNA ligase C terminal region 22 129 IPR012309 GO:0003910|GO:0006281|GO:0006310
Stsc241689g00002 151 MobiDBLite consensus disorder prediction 127 151 - -
Stsc241689g00002 151 CDD OBF_DNA_ligase_I 5 139 - -
Stsc241689g00002 151 MobiDBLite consensus disorder prediction 137 151 - -
Stsc241689g00002 151 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 3 139 - -
Stsc241689g00002 151 Gene3D - 1 148 IPR012340 -
Stsc241689g00002 151 FunFam DNA ligase 2 143 - -
Stsc241689g00002 151 SUPERFAMILY Nucleic acid-binding proteins 5 138 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241689g00002 Stsc-Chr241689 9738 11637 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241689g00002 1 139 Core DNA Replication Machinery Family AT1G08130 76.224 3.33e-69 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241689g00002 K10747 - mof:131149316 221.861