Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241688g00021 ATGGCTTTCTCAAACTTAGCGTTTCTTCTATTCTTGTTCTGTTCATTTGATCTCTCATCTTCTTACTTGACATCACTCTCGAAGGGATCTTCTCTCTCTGCACAAGACATCATTGTGTCGCAAAACGGCATATTCTCCGCCGGGTTTTTCGAAGTCGGTGACAACGCATATTGCTTAGCGGTATGGTACACAGAAAAGGCTGATTCCGAAAATACCCCTTCCGTCGTTTGGAGTGCCAATCGTGACCAACCGCTCAACGGAAAGTACTCCAAGCTTTCCCTCTCACACACCGCTAATCTTGAATTAGTGGATGCAGGTCAGTTCCAAATTTGGTCTTCAAGAACAGAATCTCATGAACATGTAGAATTATACCTAAACAATGATGGAAATCTGGTTTTGCATGAGTTGCAAGGAACTGTTCTATGGCAGAGTTTTGATTGTCCAACTGACACACTCCTTCCTGGCCAGCTTCTTACAAGACAAACACAACTAGTGTCTAGAAGAAGCGAAAGCAACCGTTCTTCCGGTTTCTACAAGTTGTTATTTGATAGCAACAATGTTCTTACTCTTCTTTATGATGGCCCTGATGTTTCAAGCACTTATTGGCCGGTTCCTTGGCTTGTAAGTTGGCAAGCTGGTAGGTTCAATTATAATAGCAGCAGAGTTGCAGTGCTGAATTCTCTTGGAGAGTTCAGTTCCTCGGATAATTATACCATTAGAACATCTGACTATGGTTTGGCACTACAAAGAAGACTAAGAATAGATTCCGATGGAAATCTTCGAGTGTATAGTCAAGATCTGTCACGAGCAAAATGGTATGTTTCTTGGCAAGCCATTACTGATAGTTGCAACATTCATGGAATTTGTGGACCTAATTCTCTGTGCAGTTTTGATCCAAAGAATGGAAGGAAATGTTCTTGTCTTCCGTGGTATAGAGTGAAGAATCAAAGTGATTGGTCTTATGGGTGTGAACCTGCATTTACCCCTACTTGCAACAAAAGTGAGTCTACCTTCTTGGAGTTACATAATGTTGAGCTTTATGGCTATGACAATCATTTTGTCGAAAATCATACCTACAGTTACTGTGAGAATTTATGCATAGAAGATTGCAATTGTAGAGGTTTTCAATACACATTTGATGAGGGAAGTGGCAAATTCCAGTGCTATACCAAAATACAATTGCACAACGGAGAGCATTCACCGAAGTTAAAAGGTGTAACCTACTTGAGAGTTCCGAGAACTAAGAGTTTTTCCAGCACTAGAGAATCTGTGAAAAAAGATGACCCTGTTTGTTATGTACATATTCATAGAGACTATCTTGGAAAACAAGTAAGTCGCTTCTCGTACTTTTTCTTGTGGTTTGCTGTTGCGCTTGGAGCTTTTGAAATGGCTTGCATTCTTGTAGTTTGGTGTTTCTTGATGAGAAGCAACTCAAAATCTGGTATAGATCAGCATGCCTACCAGCTTGTGAAATTGGGATTTAGGAAATTTACTTACTCAGAGCTGAAAAAAGCAACAAAAGGGTTCAGCCAAGAGATTGGAAGGGGCGCAGGAGGAATCGTGCTTCTGGTGTATGAGTACATGGAAAATGGTTCTTTGGCAGATTGTCTCTCATCTAATAATACACTTGACTGGAGCAAGATGTATAACATTGCACTTGGAACAGCAAGAGGTCTAGCATATTTACATGAAGAATGCTTGGAATGGATTCTGCATTGTGATATAAAGCCTCAAAACATACTTCTTGATTCAAACTATGAGCCGAAGGTATCGGATTTCGGCTTGTCTAAGCTCCTAAATAGAGATAACCTCAAGGATTCTAAATTCTCAATGATCAGAGGAACCAGAGGATATATGGCACCAGAATGGATTTTTAACCTACCAATCACATCCAAAGTAGATGTTTATAGCTACGGAATCGTTCTGTTGGAGATGATAACCGGTAAAAGTGCAACAGCAGATATCCAAGCAGTTAATGGAGTAGACACATATGATGGGAGGCTCATAACATTTGTGAGAGAGAAAAGGAGAGTAGCATCCTGGGCAGAAAAAAGCATTGATCCGGCAATTGGGACAGATTATGATGATGTGAATAAGATGAAGATCTTAGTTACAGTGGCTTTGGACTGTGTAGAGGAAGACAAAGATGCAAGACCAACTATGAGCCAAGTGGTTGAGATGCTTCAGAGACATGAAACAGATCCTTAG 2208 0.4049 MAFSNLAFLLFLFCSFDLSSSYLTSLSKGSSLSAQDIIVSQNGIFSAGFFEVGDNAYCLAVWYTEKADSENTPSVVWSANRDQPLNGKYSKLSLSHTANLELVDAGQFQIWSSRTESHEHVELYLNNDGNLVLHELQGTVLWQSFDCPTDTLLPGQLLTRQTQLVSRRSESNRSSGFYKLLFDSNNVLTLLYDGPDVSSTYWPVPWLVSWQAGRFNYNSSRVAVLNSLGEFSSSDNYTIRTSDYGLALQRRLRIDSDGNLRVYSQDLSRAKWYVSWQAITDSCNIHGICGPNSLCSFDPKNGRKCSCLPWYRVKNQSDWSYGCEPAFTPTCNKSESTFLELHNVELYGYDNHFVENHTYSYCENLCIEDCNCRGFQYTFDEGSGKFQCYTKIQLHNGEHSPKLKGVTYLRVPRTKSFSSTRESVKKDDPVCYVHIHRDYLGKQVSRFSYFFLWFAVALGAFEMACILVVWCFLMRSNSKSGIDQHAYQLVKLGFRKFTYSELKKATKGFSQEIGRGAGGIVLLVYEYMENGSLADCLSSNNTLDWSKMYNIALGTARGLAYLHEECLEWILHCDIKPQNILLDSNYEPKVSDFGLSKLLNRDNLKDSKFSMIRGTRGYMAPEWIFNLPITSKVDVYSYGIVLLEMITGKSATADIQAVNGVDTYDGRLITFVREKRRVASWAEKSIDPAIGTDYDDVNKMKILVTVALDCVEEDKDARPTMSQVVEMLQRHETDP 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241688g00021 735 Pfam D-mannose binding lectin 75 163 IPR001480 -
Stsc241688g00021 735 Pfam Protein kinase domain 521 726 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241688g00021 735 SUPERFAMILY Protein kinase-like (PK-like) 508 729 IPR011009 -
Stsc241688g00021 735 Gene3D Hepatocyte Growth Factor 339 408 - -
Stsc241688g00021 735 CDD B_lectin 38 148 IPR001480 -
Stsc241688g00021 735 FunFam Serine/threonine-protein kinase 149 276 - -
Stsc241688g00021 735 PANTHER OS07G0415500 PROTEIN 5 521 - -
Stsc241688g00021 735 SUPERFAMILY alpha-D-mannose-specific plant lectins 75 166 IPR036426 -
Stsc241688g00021 735 ProSiteProfiles Bulb-type lectin domain profile. 23 146 IPR001480 -
Stsc241688g00021 735 FunFam Putative receptor-like protein kinase 528 734 - -
Stsc241688g00021 735 Pfam S-locus glycoprotein domain 245 313 IPR000858 GO:0048544
Stsc241688g00021 735 Gene3D Transferase(Phosphotransferase) domain 1 528 734 - -
Stsc241688g00021 735 Gene3D - 18 147 IPR036426 -
Stsc241688g00021 735 ProSitePatterns Serine/Threonine protein kinases active-site signature. 570 582 IPR008271 GO:0004672|GO:0006468
Stsc241688g00021 735 Pfam PAN-like domain 331 389 IPR003609 -
Stsc241688g00021 735 ProSiteProfiles PAN/Apple domain profile. 331 413 IPR003609 -
Stsc241688g00021 735 SMART serkin_6 461 728 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241688g00021 735 PIRSF SRK 521 735 IPR024171 GO:0004674
Stsc241688g00021 735 PIRSF SRK 1 522 IPR024171 GO:0004674
Stsc241688g00021 735 ProSiteProfiles Protein kinase domain profile. 375 735 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241688g00021 735 SMART blect_4 29 148 IPR001480 -
Stsc241688g00021 735 Gene3D - 148 275 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241688g00021 Stsc-Chr241688 114602 118509 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241688g00021 457 729 Receptor kinase-like Gene Family AT1G66930 34.177 8.04e-41 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Stsc241688g00021 Pkinase 3.2e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241688g00021 - - gmx:100785351 935.25