Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241688g00010 ATGGCCATGGAGGTTGACCCTAATCTCTCCTTCTCCTTCTCCTTCTGGAAACCCCTTCGTCGTACCTTCAACCCTGACTCTCCTTTCTTCTCTTCTGGTAACCTCCAACGTGAACTCCTCGCCAAACAGGTTGCGTTGGAATTAACGGAAGAGCAGGAACAACTTGAGAATTGCATACAAGAAGATGGAAGGGAAGTCTTTTGCCCGATTGTTGGTTGTGGAACACGCCTGACTTCAATCGAGGACTTTGAAAATCACTATAATGCTAGGCATAGCGCATCCTGTTCAGTTTGTTCCAGAGTCTACCCGACTTCCCGTCTGCTCAGCATACACGTATCCGAAGTTCATGATTCTTTCTTTCAAGCAAAACTTGCACGCGGCTATGATGTGTATGAATGCTTGGTGGAAGGCTGTGGTTTAAAATTCAAAACCTATGGTAGCAGGCAGCAACATCTGGTTGACAAGCATAAATTTCCAACCTCGTTCGAATTTTTCAAGAAGTCTCGGCCATCAAAGAAACATAGGTTAAAGTCTCAGCACAAGAAATCTGTTCAGAAGGAGGATTCATCAGAAACAATGGAAGTCGAAAATGCAGCTATAGATGACCTCACTTCAGCAGTCTCTAGAATGAGCACTTCAGACTCTACTCCTTCCTCTGTCAGCTTTGGTCGTCGCAACAAAGGGTTGACATTTGCTCCACGCGTTGTTCAGCGCGCAGCCCATCAAAGAGATAATTAG 738 0.4539 MAMEVDPNLSFSFSFWKPLRRTFNPDSPFFSSGNLQRELLAKQVALELTEEQEQLENCIQEDGREVFCPIVGCGTRLTSIEDFENHYNARHSASCSVCSRVYPTSRLLSIHVSEVHDSFFQAKLARGYDVYECLVEGCGLKFKTYGSRQQHLVDKHKFPTSFEFFKKSRPSKKHRLKSQHKKSVQKEDSSETMEVENAAIDDLTSAVSRMSTSDSTPSSVSFGRRNKGLTFAPRVVQRAAHQRDN 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241688g00010 245 ProSitePatterns Zinc finger C2H2 type domain signature. 95 116 IPR013087 -
Stsc241688g00010 245 MobiDBLite consensus disorder prediction 206 225 - -
Stsc241688g00010 245 Coils Coil 41 61 - -
Stsc241688g00010 245 SMART c2h2final6 131 156 IPR013087 -
Stsc241688g00010 245 SMART c2h2final6 66 91 IPR013087 -
Stsc241688g00010 245 SMART c2h2final6 93 116 IPR013087 -
Stsc241688g00010 245 MobiDBLite consensus disorder prediction 169 194 - -
Stsc241688g00010 245 MobiDBLite consensus disorder prediction 206 245 - -
Stsc241688g00010 245 ProSitePatterns Zinc finger C2H2 type domain signature. 133 156 IPR013087 -
Stsc241688g00010 245 PANTHER UNCHARACTERIZED 10 239 IPR039258 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241688g00010 Stsc-Chr241688 45642 47766 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241688g00010 2 238 C2H2 Transcription Factor Family AT5G14140 61.134 1.00e-107 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc241688g00010 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241688g00010 - - ahf:112697187 434.876