Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241686g00052 ATGTCAATGTCCTGCAAGGATGGTAAACCAGGATTGGATAACGGCAAGTATGTCCGTTACACACCTGAGCAGGTTGAGGCCCTTGAGAGGCTCTACCATGACTGCCCCAAACCCAGCTCCATTCGCCGCCAGCAGCTCATCCGCGAGTGCCCAATCCTCTCCAACATTGAGCCCAAGCAAATCAAAGTTTGGTTCCAGAACAGAAGATGTAGGGAGAAGCAGAGGAAAGAGGCTTTGCGCCTTCAGGCTGTGAATAGGAAACTCACAGCCATGAACAAGCTGCTCATGGAGGAGAATGATAGGTTGCAGAAGCAGGTTTCTCATTTGGTGTATGAAAATGGCTACTTTCGTCAGCATACCCAAAATACTACTCTTCCAACCAAAGACACAAGCTGTGAATCTGCCGTGACTAGTGGTCAACGCAGCTTGACAAATCAGCATCCCCCAAGGGATGCAAGTCCTGCAGGGCTTTTGTCCATTGCAGAAGAGACTTTAGCAGAGTTTCTTTCAAAGGCCACTGGAACTGCTGTTGAGTGGGTCCAAATGCCTGGAATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGTTGCACTGGTGTGGCAGCACGAGCCTGCGGCCTTGTGGGTCTAGAACCCACAAGGGTTGCAGAAATCCTCAAAGATCGTCCTTCATGGTTCCGTGATTGCCGAGCTGTTGATGTGCTTAATGTGCTGCCCACAGCAAATGGTGGAACCATTGAGCTGCTTTATATGCAGCTATATGCGCCAACCACGTTGGCACCTGCTCGTGACTTCTGGTTGTTGCGCTACACATCTGTGTTAGAAGATGGAAGCTTAGTGATCTGTGAGAGATCCCTTAAGAATACACAAAATGGTCCAACCATGCCTCCTCCTTGGAGTGTTCCTGAAGTATTGCGTCCACTGTATGAATCATCAACAGTTCTGGCTCAGAAGACGACAATGGCGGCCCTACGTCAGCTAAGGCAAATTTCACATGAAGTTTCTCAGTCTAATGTCACTGGTTGGGGCAGACGACCAGCAGCTCTTCGAGCACTTGGCCAGAGACTGAGCCGGGGTTTCAATGAGGCACTCAATGGATTTACTGATGAGGGATGGTCAATGATTGGTAATGATGGTGTTGACGATGTTACAATTCTAGTGAATTCATCACCTGACAAGTTGATGGGTCTGAATCTTTCCTTTGCCAATGGATTTCCATCCGTCAGTAATGCAGTTTTATGTGCCAAAGCTTCAATGCTGTTACAGAATGTGCCTCCAGCCATTCTGCTGAGGTTCCTGCGGGAGCACAGGTCAGAATGGGCAGACAATAACATGGATGCATACTCAGCTGCTGCCATTAAAGTTGGTCCTTGTAGCTTATCAGGATCTCGCGTAGGAAATTATGGGGGTCAAGTTATTCTTCCTCTAGCCCACACTATTGAGCATGAGGAGTTTCTGGAAGTAATTAAGTTGGAAGGAATTGCTCATTCTCCTGAAGAAGCAATGATGCCCAGAGAAGTCTTTCTTCTGCAATTATGTAGTGGAATGGATGAGAATGCTGTTGGGACCTGTGCTGAACTTATATTTGCTCCAATTGATGCATCCTTTGCCGATGATGCCCCCCTTCTGCCTTCGGGATTTCGCATCATTCCTCTTGATTCTGGCAAGGAAGCATCCAATCCAAATCGTACCCTTGACCTTGCATCTGCCCTGGATGTTGGCCCCACTGGAAACAGAGCATCTAATGAAACTTCTGGAAATTCTGGCTCTGTGAGATCTGTGATGACAATAGCCTTTGAATTTGCATTTGAGAGCCATATGCAAGAGCATGTAGCTTCCATGGCACGCCAGTATGTTCGCAGCATTATATCATCAGTCCAAAGGGTAGCGTTAGCGCTTTCACCTTCTCATTTGAGTTCACAAGCTGGGCTTAGGACACCACTGGGCACTCCTGAAGCGCAAACTCTAGCTCGCTGGATCTGCAATAGTTACAGGTGCTACTTGGGTGTTGAGCTACTTAAATCAAATAATGAGGGGAACGAATCTCTACTCAAGTCATTGTGGCATCACTCAGATGCATTATTGTGCTGCACTCTAAAGGCATTGCCAGTGTTCACTTTTGCAAACCAAGCAGGGCTTGACATGCTGGAGACTACCTTAGTTGCACTGCAGGATATAACTCTGGAGAAGATATTTGATGATCATGGCCGAAAGATTCTCTGCTCAGAGTTTCCCCAAATCATTCAACAGGGTTTTGCATGCCTTCAAGGTGGTATATGTCTGTCAAGCATGGGGCGACCAATCTCCTATGAAAGAGTAGTGGCTTGGAAGGTGCTGAATGAAGAGGAGAATGCTCATTGTATTTGCTTTATGTTTATGAACTGGTCTTTTGTTTAA 2409 0.4699 MSMSCKDGKPGLDNGKYVRYTPEQVEALERLYHDCPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEALRLQAVNRKLTAMNKLLMEENDRLQKQVSHLVYENGYFRQHTQNTTLPTKDTSCESAVTSGQRSLTNQHPPRDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPTRVAEILKDRPSWFRDCRAVDVLNVLPTANGGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVICERSLKNTQNGPTMPPPWSVPEVLRPLYESSTVLAQKTTMAALRQLRQISHEVSQSNVTGWGRRPAALRALGQRLSRGFNEALNGFTDEGWSMIGNDGVDDVTILVNSSPDKLMGLNLSFANGFPSVSNAVLCAKASMLLQNVPPAILLRFLREHRSEWADNNMDAYSAAAIKVGPCSLSGSRVGNYGGQVILPLAHTIEHEEFLEVIKLEGIAHSPEEAMMPREVFLLQLCSGMDENAVGTCAELIFAPIDASFADDAPLLPSGFRIIPLDSGKEASNPNRTLDLASALDVGPTGNRASNETSGNSGSVRSVMTIAFEFAFESHMQEHVASMARQYVRSIISSVQRVALALSPSHLSSQAGLRTPLGTPEAQTLARWICNSYRCYLGVELLKSNNEGNESLLKSLWHHSDALLCCTLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKILCSEFPQIIQQGFACLQGGICLSSMGRPISYERVVAWKVLNEEENAHCICFMFMNWSFV 802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241686g00052 802 CDD bZIP 68 107 - -
Stsc241686g00052 802 ProSiteProfiles START domain profile. 150 310 IPR002913 GO:0008289
Stsc241686g00052 802 MobiDBLite consensus disorder prediction 572 593 - -
Stsc241686g00052 802 Pfam Homeodomain 16 74 IPR001356 GO:0003677
Stsc241686g00052 802 MobiDBLite consensus disorder prediction 121 149 - -
Stsc241686g00052 802 ProSiteProfiles 'Homeobox' domain profile. 11 75 IPR001356 GO:0003677
Stsc241686g00052 802 SMART HOX_1 13 79 IPR001356 GO:0003677
Stsc241686g00052 802 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 302 802 IPR044830 GO:0003700
Stsc241686g00052 802 MobiDBLite consensus disorder prediction 579 593 - -
Stsc241686g00052 802 Gene3D - 12 80 - -
Stsc241686g00052 802 Pfam MEKHLA domain 659 801 IPR013978 -
Stsc241686g00052 802 SUPERFAMILY Homeodomain-like 13 78 IPR009057 -
Stsc241686g00052 802 Coils Coil 81 105 - -
Stsc241686g00052 802 CDD homeodomain 16 76 IPR001356 GO:0003677
Stsc241686g00052 802 FunFam Homeobox-leucine zipper protein REVOLUTA 16 71 - -
Stsc241686g00052 802 Pfam START domain 160 298 IPR002913 GO:0008289
Stsc241686g00052 802 Gene3D - 194 360 IPR023393 -
Stsc241686g00052 802 SMART START_1 159 334 IPR002913 GO:0008289
Stsc241686g00052 802 MobiDBLite consensus disorder prediction 121 153 - -
Stsc241686g00052 802 SUPERFAMILY Bet v1-like 159 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241686g00052 Stsc-Chr241686 192879 198690 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241686g00052 1 754 Homeobox Transcription Factor Family AT1G52150 82.323 0.0 1340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Stsc241686g00052 MEKHLA 6.7e-51 CL0183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241686g00052 K09338 - zju:107428556 1510.35