Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241686g00051 ATGGAATTGCCGGAATACTTCATGGCGGGATATTTCGCCGTCACACCCGACCAACTCTCGCCGGAGAAGCGTCACGCTGACCAGAAGCCCAGCGAGGTTTTCACCATTGATGACCTTCTCGACTTCTCCAACGCCAACGCTGAAGCTATCACATCCGACGGATTTTTCAACAATACTGCCGGAAACTCCACCGACGTCTCTGTCGTCACCGCCGTCGACAGCTGCAACTCCTCCATTTCCGGCAGCAGTTTCCGCTGCTTCGCCGCCGTGGATCCTCAATTCTCCGAAGAGTTCAGCGTTCCGTATGAGGACATGGCGGAGCTCGAATGGCTCTCGAATTTCGTTGAAGAGTCGTTTCCGGCGGAGGAGGAGCTGAAAACTCTGCATCTTATCTCCGGCGTGAAGCCTCAGATCGAGACATCTCAATCTTCTTCTTCATCGGATGCTCAAAACGCATCGTTATTCCACCCGGAGACGCCTCTCCCGGCGAAGGCGCGAAGCAAGCGCTCCCGTGCCGCGCCGGGAGATTGGTCCACGCGCGTGGTTCGCGTTGTTAAAGCGGAAGCAGAACAAAGGCCCGCGAAGAAGAGAGACGGGCCGAATTCCGAAGCATCGGGCCGAAAATGCCTGCACTGCGCGGCAGAACAGACGCCGCAGTGGCGAACTGGGCCCATGGGCCCAAAGACGTTGTGCAATGCGTGCGGAGTAAGGTATAAGTCTGGGAGGTTGGTGCCGGAGTACAGGCCCGCGGCAAGCCCAACGTTCGTGTCGACGAAGCATTCAAATTCGCATAGGAAGGTGTTGGAGCTGAGGAGGCAGAAGGAGATGCATCATCCTCACCATTTGATTAGTCAGAGTTCGGTTTTCGACGTATCCAACGGTGGAGATTCGTTCTTGATCCATCACAGTAACCGTTCTGATTGTAGGAACGTCTAA 936 0.5556 MELPEYFMAGYFAVTPDQLSPEKRHADQKPSEVFTIDDLLDFSNANAEAITSDGFFNNTAGNSTDVSVVTAVDSCNSSISGSSFRCFAAVDPQFSEEFSVPYEDMAELEWLSNFVEESFPAEEELKTLHLISGVKPQIETSQSSSSSDAQNASLFHPETPLPAKARSKRSRAAPGDWSTRVVRVVKAEAEQRPAKKRDGPNSEASGRKCLHCAAEQTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVSTKHSNSHRKVLELRRQKEMHHPHHLISQSSVFDVSNGGDSFLIHHSNRSDCRNV 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241686g00051 311 ProSitePatterns GATA-type zinc finger domain. 209 234 IPR000679 GO:0006355|GO:0043565
Stsc241686g00051 311 Gene3D - 203 253 IPR013088 GO:0006355|GO:0008270
Stsc241686g00051 311 FunFam GATA transcription factor 197 284 - -
Stsc241686g00051 311 PIRSF Txn_fac_GATA_plant 17 293 IPR016679 GO:0003677|GO:0005634|GO:0045893
Stsc241686g00051 311 ProSiteProfiles GATA-type zinc finger domain profile. 203 239 IPR000679 GO:0006355|GO:0043565
Stsc241686g00051 311 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 205 267 - -
Stsc241686g00051 311 CDD ZnF_GATA 208 255 IPR000679 GO:0006355|GO:0043565
Stsc241686g00051 311 MobiDBLite consensus disorder prediction 139 178 - -
Stsc241686g00051 311 PANTHER GATA TRANSCRIPTION FACTOR 24 278 - -
Stsc241686g00051 311 SMART GATA_3 203 253 IPR000679 GO:0006355|GO:0043565
Stsc241686g00051 311 MobiDBLite consensus disorder prediction 139 154 - -
Stsc241686g00051 311 Pfam GATA zinc finger 209 242 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241686g00051 Stsc-Chr241686 187434 188590 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241686g00051 34 303 C2C2-Gata Transcription Factor Family AT4G32890 47.973 6.21e-81 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Stsc241686g00051 GATA 2.6e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241686g00051 - - qsa:O6P43_018201 407.912