Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241686g00045 ATGACTCAACCTTCTACAAATTCATCCTCCTCCAACACACGCTCCCCTAAGAAACAGAGTAGCCCCAAGAAACCCAGAGACTGCAGCAAGCACCCGCTCTACCACGGCGTGCGGATGCGAAATTGGGGGAAATGGGTCTCCGAGATTCGCGAGCCGCGCAAGAAATCTCGAATCTGGCTCGGCACCTTCGCTACACCTGAAATGGCAGCACGTGCGCACGACGTCGCCGCCTTGTGCATTAAGGGGAAAGCAGCCATTCTTAACTTCCCAAAGATTGCTAAATTGCTCCCTAGACCGGTCACGCCGACCCCACGTGACATCCAGGCCGCGGCCGCAGAAGCCGCGGCCATGGTGAAATTCGACTCTGAAGAGGCAACAGAGTCGTCTGAGCTTAGTGAGATTGTTGAGCTGCCAAATATAGAAGAAGAGAGCTTTGAATCGGTGGACTCGGGAACTGAGTTCATGGTTCTTGACTCGGTGGATGGTTGGGTGTTCCCTTCCAGTTTCTCTGAAATGATGAGCATGTTTGGAACGCAAGACATCTCTGCCTCTGATTCTGATGAGTGTGTAGTTCCAATTTGGGGTTCTGCTTAG 594 0.5269 MTQPSTNSSSSNTRSPKKQSSPKKPRDCSKHPLYHGVRMRNWGKWVSEIREPRKKSRIWLGTFATPEMAARAHDVAALCIKGKAAILNFPKIAKLLPRPVTPTPRDIQAAAAEAAAMVKFDSEEATESSELSEIVELPNIEEESFESVDSGTEFMVLDSVDGWVFPSSFSEMMSMFGTQDISASDSDECVVPIWGSA 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241686g00045 197 CDD AP2 32 90 IPR001471 GO:0003700|GO:0006355
Stsc241686g00045 197 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 11 146 - -
Stsc241686g00045 197 SUPERFAMILY DNA-binding domain 33 90 IPR016177 GO:0003677
Stsc241686g00045 197 MobiDBLite consensus disorder prediction 1 32 - -
Stsc241686g00045 197 MobiDBLite consensus disorder prediction 1 18 - -
Stsc241686g00045 197 Pfam AP2 domain 32 82 IPR001471 GO:0003700|GO:0006355
Stsc241686g00045 197 Gene3D AP2/ERF domain 33 92 IPR036955 GO:0003700|GO:0006355
Stsc241686g00045 197 SMART rav1_2 33 96 IPR001471 GO:0003700|GO:0006355
Stsc241686g00045 197 PRINTS Ethylene responsive element binding protein signature 56 72 IPR001471 GO:0003700|GO:0006355
Stsc241686g00045 197 PRINTS Ethylene responsive element binding protein signature 34 45 IPR001471 GO:0003700|GO:0006355
Stsc241686g00045 197 ProSiteProfiles AP2/ERF domain profile. 33 90 IPR001471 GO:0003700|GO:0006355
Stsc241686g00045 197 FunFam Ethylene-responsive transcription factor 2 32 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241686g00045 Stsc-Chr241686 159202 160228 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241686g00045 4 166 AP2-EREBP Transcription Factor Family AT5G11590 52.880 2.83e-57 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Stsc241686g00045 AP2 1.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241686g00045 - K09286 gmx:100801780 228.794