Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241686g00029 ATGTCTACACCTTTGGAACATGATTACATAGGCTTAGCAGAGAAGCCTTCTCCTTCCTCTGATGAACATGGCAAGACCTTCAAGGAGACTGAGTTAAGGCTTGGCCTCCCAGGTTCTGAGTCTCCAGAGAGAAAACCACTTTCTGGGGTGTCTCTTTCTCTATTTGGGAAGCACAATAATAATAATAATGTGAAGAGCCACCACCATGTCCATGTGGCTGGTGCCAAGAGAGGCTTTTCTGATGCCATTGATGCTAAATGGGGTTTCTCTGTCTCTGTCACTGATACTCATGTTTCTGAGCCTGACTTAGGAAAAGCTTCTGCTTTGTTGGGAAGAGGGAATGTTGGGAAGCTTCCATTGGAGCCTAAAACCATTAGCACCCAGCAAGGAAACACTCTAAACACCCCTGCTTCTGCTTCACAAGCCCTCAAAGAGATCAAGCCTCTTCAGGAAAAGAACCCTCAAGTTCCTGCAACAAATGAGCATGCTGCTGCTCCTGCTGCTAAAGCACAGGTTGTGGGGTGGCCACCAATCCGATCGTTTCGAAAGAACACGATGGCCTCTAATTTGACAAAGAACAACAATGAAGCTGAAGGGAAACCAGGATTTGGTTGTTTGTATGTGAAGGTTAGCATGGATGGTGCTCCTTATCTAAGAAAGGTTGATCTCAAAACCTACAGCAACTATAAGGAACTTTCTTCAGCTCTTGAGAAGATGTTCAGCTGCTTCACCATTGGTCAGTGCAACTCTCCTGGGCTTCCTGGAAAAGATGGATTAAGTGAGAGCTCTTTGAGGGATCTTCTTCATGGCTCTGAATATGTTCTTACTTATGAAGACAAAGATGGAGATTGGATGCTTGTGGGAGATGTTCCTTGGGAGATGTTCACTGACTCATGCATGAGACTGAGGATCATGAAAGGGTCTGAGGCAATTGGACTAGCTCCAAGGGCAGTGGAAAAGTCAAAGAGCCAAAACTAG 978 0.455 MSTPLEHDYIGLAEKPSPSSDEHGKTFKETELRLGLPGSESPERKPLSGVSLSLFGKHNNNNNVKSHHHVHVAGAKRGFSDAIDAKWGFSVSVTDTHVSEPDLGKASALLGRGNVGKLPLEPKTISTQQGNTLNTPASASQALKEIKPLQEKNPQVPATNEHAAAPAAKAQVVGWPPIRSFRKNTMASNLTKNNNEAEGKPGFGCLYVKVSMDGAPYLRKVDLKTYSNYKELSSALEKMFSCFTIGQCNSPGLPGKDGLSESSLRDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDSCMRLRIMKGSEAIGLAPRAVEKSKSQN 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241686g00029 325 MobiDBLite consensus disorder prediction 1 47 - -
Stsc241686g00029 325 ProSiteProfiles PB1 domain profile. 205 307 IPR000270 GO:0005515
Stsc241686g00029 325 FunFam Auxin-responsive protein 200 317 - -
Stsc241686g00029 325 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 26 312 IPR003311 GO:0005634|GO:0006355
Stsc241686g00029 325 SUPERFAMILY CAD & PB1 domains 205 306 - -
Stsc241686g00029 325 Pfam AUX/IAA family 29 316 IPR033389 -
Stsc241686g00029 325 Gene3D - 202 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241686g00029 Stsc-Chr241686 116337 118519 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241686g00029 207 319 B3 DNA Binding Superfamily AT1G30330 29.204 6.04e-08 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Stsc241686g00029 AUX_IAA 1.6e-92 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241686g00029 K14484 - gmx:100806699 414.846