Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241686g00024 ATGGCCGCGGACATGTCCAACAACAACAGCAACCCTTCTCGCGCCAAGGACTTCTTCCCTTCCCCAGCTCTCTCCCTCAGCCTTGCTGGGATATTTCGGCATGCTGGGGCTGCCGAGGGTGAGGCTGCTGCAACCTCGAACATGGAGGTGGAGGAGGGTGATGAAGGGCACACGGTGGAGATTAGCAGCGAGAACTCGGGCCCCACTAGATCGAGATCGGAGGATGATTACTTTGAAGGAGAAGGTGATCATGAAGATGAAGATATTATTATTGGTGATGATGATAACAATAATAAGAACAAAAACAAGAAGAAGAGGAAGAAATATCACAGACACACCGCTGACCAGATCAGAGAAATGGAAGCGCTATTCAAAGAGTCACCACATCCTGATGAAAAGCAGAGGCAACAACTTAGCAAGCAACTAGGCCTTGCTCCAAGGCAAGTCAAGTTTTGGTTCCAAAACCGCAGAACCCAAATCAAGGCAATACAAGAGCGACATGAGAACTCATTGTTGAAGACGGAAATAGAGAAGCTAAAGGAGAAAAACAAAGGCTTGAGAGACACCATAAACAAAGCTTGTTGCCCCAACTGTGGTGTCACAACCACCACAAGAGATGGTGCTGCCATGCCAACTGAAGAACAACAACTTCGCATTGAGAATGCCAAACTCAAAGCTGAGGTAGACAAGCTCAGAGGAGCTTTAGCCAAATATGGTGGTGCTGCTGGATCATCAACTTCTCCTTCAAGTTCTTCCGGTGGTGGTGGTGGTGGTGGTGGAAATGAGCAAGAGAATAATAGAAGCTCGTTGGATTTTTACACAGGAATTTTCGGAGTTGACAAGTCAAGGATAATGGACACAGTGAAGAAGGCTATGGAGGAACTCATAAAGATGGCAACAATGGGGGAACCCTTGTGGCTTCGTAGTGTTGAGACTGGCCGCGAGATACTCAACTACGATGAGTATATCAAACACTTTGCACTTGAAACTTGTTCTTCTTCTTCTTCATCATCAAAGAGATCCATTATTGAAGCTTCAAGAGACACTGCCCTTGTCTTTGTTGATCTCCCACGCCTTCTCCAAATCTTCTTAGATGCCAATCAGTGGAAGGAAATGTTTCCATGTTTAATATCAAAGGCGGCAACTGTGGATGTTATATGCAACGGAGAAGGTTCTAACAGGGACGGTGCAGTTCAACTGATGTTTGCTGAGGTGCAAATGCTAACACCAATGGTGGGCACAAGAGAAGTGTATTTTGTCCGTTACTCAAAACAGTTAAGTGCAGAACAGTGGGCTATCATTGATGTATCCATAGACAAAGTAGAAGACAACATTGATGCCTCCCTCGTGAAATGTAGAAAACGCCCCTCTGGTTGCATTATTGAGGACAAGTCAAATGGTCATTGCAAGGTGACATGGGTGGAGCACTTGGAATGCCAAAAGAGCCCAGTGGCTACAATGTATCGGACCATTGTGAACAGTGGCATGGCCTTTGGTGCAAGGCACTGGCTTACCACTCTCCAGCTTCAGTGCGAGCGTCTTGTTTTCTTCATGGCAACCAATGTTCCCATGAAGGATTCATTAGGTGTTGCCACATTGGCTGGGAGGAAAAGCATTTTGAAGTTGGCTCAAAGAATGACATGGGGTTTCTGCCATGCAATTGGTGCCTCAAGCTTCCACACATGGACCAAGGTTACAAGTAAAACTGGGGAAGACATTAGGATCAGTTCAAGGAAGAATCTGAATGATCCTGGTGAACCTCTTGGACTCATACTCTGCGCTGTTTCCTCTGTCTGGTTACCTGTCTCTCCTAATGTCTTGTTTGATTTCTTGAGGGATGAAACTCACCGCACCGAGTGGGATATAATGTGCAGTGGTGGATCAGTTCAGTCCATTGCAAATTTGGCCAAGGGACAAGACCGTGGCAATGCAGTAACCATCCAAACAATAAAATCTAAGGATAATAGTATGTGGATAGTGCAAGATTGCTGCACAAATGCTTTTGAGTCAATGGTGGTGTATGCTCCTGTGGACATCAGTGGCATTCAATCCGTGATGACAGGTTGCGACTCGAGCAATCTCGCCGTACTTCCCTCCGGATTCTCGATTGTTCATGACGGGATAGAATCAAGGCCTATGGTGATTACTTCAAGACAGGAGGAGAAGAACACAGAAGGAGGGTCCTTGTTCACCATAGCATTCCAGATCCTCACCAATGCTTCTCCAACAGCCAAGTTAACCATGGAGTCTGTGGACTCGGTCAACACTCTCTTATCTTGTACTTTGAGAAATATCAGAACAAGTTTACAATGCGAAGATGGTTAA 2325 0.4585 MAADMSNNNSNPSRAKDFFPSPALSLSLAGIFRHAGAAEGEAAATSNMEVEEGDEGHTVEISSENSGPTRSRSEDDYFEGEGDHEDEDIIIGDDDNNNKNKNKKKRKKYHRHTADQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKAIQERHENSLLKTEIEKLKEKNKGLRDTINKACCPNCGVTTTTRDGAAMPTEEQQLRIENAKLKAEVDKLRGALAKYGGAAGSSTSPSSSSGGGGGGGGNEQENNRSSLDFYTGIFGVDKSRIMDTVKKAMEELIKMATMGEPLWLRSVETGREILNYDEYIKHFALETCSSSSSSSKRSIIEASRDTALVFVDLPRLLQIFLDANQWKEMFPCLISKAATVDVICNGEGSNRDGAVQLMFAEVQMLTPMVGTREVYFVRYSKQLSAEQWAIIDVSIDKVEDNIDASLVKCRKRPSGCIIEDKSNGHCKVTWVEHLECQKSPVATMYRTIVNSGMAFGARHWLTTLQLQCERLVFFMATNVPMKDSLGVATLAGRKSILKLAQRMTWGFCHAIGASSFHTWTKVTSKTGEDIRISSRKNLNDPGEPLGLILCAVSSVWLPVSPNVLFDFLRDETHRTEWDIMCSGGSVQSIANLAKGQDRGNAVTIQTIKSKDNSMWIVQDCCTNAFESMVVYAPVDISGIQSVMTGCDSSNLAVLPSGFSIVHDGIESRPMVITSRQEEKNTEGGSLFTIAFQILTNASPTAKLTMESVDSVNTLLSCTLRNIRTSLQCEDG 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241686g00024 774 MobiDBLite consensus disorder prediction 1 20 - -
Stsc241686g00024 774 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 103 769 IPR042160 -
Stsc241686g00024 774 MobiDBLite consensus disorder prediction 239 266 - -
Stsc241686g00024 774 Coils Coil 214 234 - -
Stsc241686g00024 774 Pfam START domain 290 513 IPR002913 GO:0008289
Stsc241686g00024 774 Coils Coil 162 189 - -
Stsc241686g00024 774 Gene3D - 92 175 - -
Stsc241686g00024 774 SMART HOX_1 105 167 IPR001356 GO:0003677
Stsc241686g00024 774 MobiDBLite consensus disorder prediction 242 266 - -
Stsc241686g00024 774 ProSitePatterns 'Homeobox' domain signature. 138 161 IPR017970 GO:0000981|GO:0006355
Stsc241686g00024 774 FunFam Homeobox-leucine zipper protein HDG1 92 179 - -
Stsc241686g00024 774 SUPERFAMILY Bet v1-like 279 513 - -
Stsc241686g00024 774 Pfam Homeodomain 106 161 IPR001356 GO:0003677
Stsc241686g00024 774 SMART START_1 286 513 IPR002913 GO:0008289
Stsc241686g00024 774 CDD START_ArGLABRA2_like 281 512 - -
Stsc241686g00024 774 ProSiteProfiles START domain profile. 277 516 IPR002913 GO:0008289
Stsc241686g00024 774 MobiDBLite consensus disorder prediction 38 113 - -
Stsc241686g00024 774 CDD homeodomain 110 161 IPR001356 GO:0003677
Stsc241686g00024 774 MobiDBLite consensus disorder prediction 1 16 - -
Stsc241686g00024 774 SUPERFAMILY Bet v1-like 546 759 - -
Stsc241686g00024 774 Gene3D - 330 511 IPR023393 -
Stsc241686g00024 774 FunFam Homeobox-leucine zipper protein GLABRA 2 286 512 - -
Stsc241686g00024 774 SUPERFAMILY Homeodomain-like 94 164 IPR009057 -
Stsc241686g00024 774 ProSiteProfiles 'Homeobox' domain profile. 103 163 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241686g00024 Stsc-Chr241686 75316 81145 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241686g00024 61 773 Homeobox Transcription Factor Family AT1G79840 62.953 0.0 908
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Stsc241686g00024 START 4.8e-51 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241686g00024 K09338 - gmx:100809926 1195.65