Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241685g00025 ATGGCAGAAAGATTGTTCCTCGTAAGCAGTGAGGAAGAGAGAAAGTTGAAACGCAAGATTGAAGATTCACCCACCATGGACGGTCTAGAGCCACAGTCAGAGCCAGAGTCAGACAACTCAACACTGACTCTGACTCTAGCAATCAAAACCACGGAGGATGAATCCGAATCTAAAGCCAACTCGACCTCTAAACCCTCAAAAGATCCTGAAGGTTCAGGATCAAATACTCTCCAAAATCCTTTAGATTCTGACAAGAAGGAGGCAGAACACCATGTTCATAATAATAATGACGATAATGTTGGCGAAAACGACGACAACAATGAAGATCATCCTCCATTCAATTGTGGATACTGCAAGAGAAGATTCAGCACTTCCCAAGCCCTTGGGGGACACCAAAACGCACACAGGAGTGAGCGTTCTCCCTTAAACAACAAAAGAAAGAAAACAAACCAACCCGAAGATACAGACCAAACAAATCTATATACTAGCCGTGGTGGTCTTGGTAGTCTTCTTAGTTCAAAGTATTCTTCACCATACTCCACCGTGCCAAGCCTGAGATTCCAAGGGCTATTATCATCCTCTTCATCGTCATTGTCATTGTCATCCTCAACCCTAACTCCACACCAATTCCGTCGCGGGGGCGTCATGATGACAGGGAGTCACGTGACTAGTCGCGTGCCACCTTTCTCGTCCTGGCGCCCCGGTTCGATTGGTGGTCGACCATTTGGAGGCTATGGCTCTCCTTATGGGATGCGATCTTTCCCCAAAGCATCGTCATCCCTATGGCGGCCGCAGCAAAATCGGTTTGGGGTGAATAGCTCTTGGAGAGAGGAACACAGTGGCGGTATTTTGGAGAGAATTAACCACAATAGGCACATGGGGCTTCTCAATGAACTCAGTCGCATCCCTTCATCTCCCGACGCTGCCATCCGGAATGGCCGTCATCAACCTCATGACGGCCAAGGTGGCAGCGGTGGTGGTACGAGCAATGGTGCTGAAAATAATAATAATAATAATAATAATAATGATGGAAATTCCAGTGTGGCACCAAATGCTTCAGCATCGGAAGAGCTGGACTTAACCCTGAGTCTTTGA 1095 0.4721 MAERLFLVSSEEERKLKRKIEDSPTMDGLEPQSEPESDNSTLTLTLAIKTTEDESESKANSTSKPSKDPEGSGSNTLQNPLDSDKKEAEHHVHNNNDDNVGENDDNNEDHPPFNCGYCKRRFSTSQALGGHQNAHRSERSPLNNKRKKTNQPEDTDQTNLYTSRGGLGSLLSSKYSSPYSTVPSLRFQGLLSSSSSSLSLSSSTLTPHQFRRGGVMMTGSHVTSRVPPFSSWRPGSIGGRPFGGYGSPYGMRSFPKASSSLWRPQQNRFGVNSSWREEHSGGILERINHNRHMGLLNELSRIPSSPDAAIRNGRHQPHDGQGGSGGGTSNGAENNNNNNNNNDGNSSVAPNASASEELDLTLSL 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241685g00025 364 Gene3D Classic Zinc Finger 83 164 - -
Stsc241685g00025 364 MobiDBLite consensus disorder prediction 82 109 - -
Stsc241685g00025 364 PANTHER ZINC FINGER PROTEIN JAGGED 38 363 IPR045320 GO:0003700
Stsc241685g00025 364 MobiDBLite consensus disorder prediction 322 364 - -
Stsc241685g00025 364 MobiDBLite consensus disorder prediction 126 165 - -
Stsc241685g00025 364 SUPERFAMILY beta-beta-alpha zinc fingers 110 140 IPR036236 -
Stsc241685g00025 364 MobiDBLite consensus disorder prediction 138 153 - -
Stsc241685g00025 364 MobiDBLite consensus disorder prediction 64 81 - -
Stsc241685g00025 364 MobiDBLite consensus disorder prediction 1 112 - -
Stsc241685g00025 364 Pfam C2H2-type zinc finger 113 138 - -
Stsc241685g00025 364 ProSiteProfiles Zinc finger C2H2 type domain profile. 113 140 IPR013087 -
Stsc241685g00025 364 MobiDBLite consensus disorder prediction 1 25 - -
Stsc241685g00025 364 MobiDBLite consensus disorder prediction 303 364 - -
Stsc241685g00025 364 ProSitePatterns Zinc finger C2H2 type domain signature. 115 135 IPR013087 -
Stsc241685g00025 364 MobiDBLite consensus disorder prediction 30 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241685g00025 Stsc-Chr241685 197507 198601 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241685g00025 113 153 C2H2 Transcription Factor Family AT5G01860 62.791 1.38e-09 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc241685g00025 zf-C2H2_6 3.4e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241685g00025 - - ahf:112757344 328.561