Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241685g00010 ATGGCATGTATAATATTCTTTGCTCTGTTTTGCCTCATCCCAATAATAGCATTAGCTTATGCTATAAGAATCAGGGAAGGTGCATCAGAAGAGGATATTAGGTCACTTCCTAAGTATAGGTTTGGCCAATCAAATTTGTTAGTGTTGGTTGATGACAAGAAGCAAATTTCCAAAGCAGGATCGGATTCATACAACGAAAATCATATCAGTGAACTTTTTCTCCAACCAGATGATTCTGAATGCTGCATCTGCCTATCACCCTATGTTGATGGAGCAGAATTGTATCGCCTCCCATGTACCCACCATTTCCATTGTGGATGCATCAGCCGCTGGCTCCGGACAAAAGCAACTTGCCCACTCTGCAAATTCAATATCCTTAGAGGCGATACGTTAGTCTAA 399 0.4135 MACIIFFALFCLIPIIALAYAIRIREGASEEDIRSLPKYRFGQSNLLVLVDDKKQISKAGSDSYNENHISELFLQPDDSECCICLSPYVDGAELYRLPCTHHFHCGCISRWLRTKATCPLCKFNILRGDTLV 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241685g00010 132 ProSiteProfiles Zinc finger RING-type profile. 81 122 IPR001841 -
Stsc241685g00010 132 PANTHER TARGET OF ERK KINASE MPK-1 2 126 - -
Stsc241685g00010 132 SMART ring_2 81 121 IPR001841 -
Stsc241685g00010 132 SUPERFAMILY RING/U-box 73 126 - -
Stsc241685g00010 132 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 50 129 IPR013083 -
Stsc241685g00010 132 Pfam Ring finger domain 80 122 IPR001841 -
Stsc241685g00010 132 FunFam E3 ubiquitin protein ligase RIE1 61 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241685g00010 Stsc-Chr241685 86300 88041 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241685g00010 1 129 C3H Transcription Factor Family AT1G68070 53.731 1.99e-41 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241685g00010 - - ccaj:109802683 235.343