Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241685g00002 ATGGGACAGCGCACGGCGCTGGTGGCGTGGGACTTGGTGCTCTCCGCGATGTGGGTGTGCTCAGGCGTTCTTGTCAGGATTCTCGTCTTCGATGTCATGCAAGTTGGCCGCCGTAACGGTCACCTGGCTGCGGAGCTTCTCAAGATTGGGCTCTCTGTTGCCAACATGTTCTTCTTTGCATTCCTTTGCAAGGCCACTCGTGGTGGGGCCTACAACCCGTTAACCGTTTTGTCATCTGCCTTCTCTGGAAGCTTCCGAAGCTTCCTTTACTGTGTTGCTGCCAGGATCCCCGCTCAGGTGCTTGGATCTATAATTGGAGTTAAGCTTCTAATTGATACCATTCCTGAAGTAGGACGTGGACCGCGATTGAATACCGACATTCATTGGGGTGCCTTGACAGAAGGGTTACTAACATATGCAATTGTGACCATTTCTCTTGCTCTAGCCACCAATATCCGTGGAGGTTTCTTCATGAAGACGTGGATCTCTAGTCTCTCCAAGCTAACACTTCACATACTTGGCTCCGATCTTACTGGTGGTTGTATGAACCCTGCCTCTGTAATGGGGTGGGCTTATGCTAGAGGAGATCACATAACAAAGGAGCACATTCTTGTGTACTGGATTGCCCCCATAGAGGCAACTATATNNNNNNNNNNAGTTTGGACATTCAAATTGTTAGTACGGCCTGTGAAAGAAGATAAAACTGCCTCAAAAACCAAATCGGATTGA 729 0.4829 MGQRTALVAWDLVLSAMWVCSGVLVRILVFDVMQVGRRNGHLAAELLKIGLSVANMFFFAFLCKATRGGAYNPLTVLSSAFSGSFRSFLYCVAARIPAQVLGSIIGVKLLIDTIPEVGRGPRLNTDIHWGALTEGLLTYAIVTISLALATNIRGGFFMKTWISSLSKLTLHILGSDLTGGCMNPASVMGWAYARGDHITKEHILVYWIAPIEATIXXXXVWTFKLLVRPVKEDKTASKTKSD 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241685g00002 242 PRINTS Major intrinsic protein family signature 204 224 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc241685g00002 242 PRINTS Major intrinsic protein family signature 91 110 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc241685g00002 242 PRINTS Major intrinsic protein family signature 133 151 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc241685g00002 242 PRINTS Major intrinsic protein family signature 164 186 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc241685g00002 242 PANTHER AQUAPORIN SIP2-1-RELATED 3 242 IPR044226 GO:0015267
Stsc241685g00002 242 Gene3D Glycerol uptake facilitator protein. 7 239 IPR023271 -
Stsc241685g00002 242 Pfam Major intrinsic protein 38 211 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc241685g00002 242 SUPERFAMILY Aquaporin-like 10 225 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241685g00002 Stsc-Chr241685 14843 16763 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241685g00002 4 242 Major Intrinsic Protein MIP AT3G56950 56.067 2.38e-95 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241685g00002 K09875 - gmx:100786138 334.724