Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241684g00040 ATGAACATGAAGTTCAACCCAAGAGTTTCGATCAGTCGCCGCAAGGCTTACTTCACGGCCCCGTTGAGCGTGCGGCGCGTTCTCCAAGCACACTTCTCTCCGTCGACGCTCCAAGTACAACGTGCGGTCTCTCAGGTGAGGTTTAGGTTGTTCGTGACACCTACAAGGGCATGTGAGGGCAAGGTCTCTCAGGTGTACGGCCGCAAAGGGGTAATCCACATCAAGCGTATGATGCGCGAGAAGGTTAATGGCTCCACCGTCAACATCGGAATCCACCTTTCCAAGGTTGTTATCGCTAAGCTTTGCTTCAACAAGGACCGCGAGTCTCTCCTTGATTGTAAGGCGAAGGGCCGCGCCGCCACTGATAAGAAAAAGAAAGGTACCAAGTATGTTCCAGAAGATATCTTGCAGACCGTCGATTTAATTTACTCTCTCTCCTCCTCTCCTTATATTTGA 456 0.5088 MNMKFNPRVSISRRKAYFTAPLSVRRVLQAHFSPSTLQVQRAVSQVRFRLFVTPTRACEGKVSQVYGRKGVIHIKRMMREKVNGSTVNIGIHLSKVVIAKLCFNKDRESLLDCKAKGRAATDKKKKGTKYVPEDILQTVDLIYSLSSSPYI 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241684g00040 151 CDD KOW_RPL26 59 98 IPR041988 GO:0003723
Stsc241684g00040 151 Pfam Ribosomal proteins L26 eukaryotic, L24P archaeal 13 113 IPR005756 GO:0003735|GO:0006412|GO:0015934
Stsc241684g00040 151 SUPERFAMILY Translation proteins SH3-like domain 12 117 IPR008991 -
Stsc241684g00040 151 NCBIfam 50S ribosomal protein L24 13 114 IPR005756 GO:0003735|GO:0006412|GO:0015934
Stsc241684g00040 151 Gene3D - 53 135 IPR014722 -
Stsc241684g00040 151 PANTHER 60S RIBOSOMAL PROTEIN L26 FAMILY MEMBER 3 128 IPR005756 GO:0003735|GO:0006412|GO:0015934
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241684g00040 Stsc-Chr241684 191095 191617 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241684g00040 3 140 Cytoplasmic Ribosomal Protein Gene Family AT5G67510 54.422 1.59e-41 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241684g00040 K02898 - gmx:100819391 145.206