Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241684g00039 ATGGGAGACTCGTCGTTGCCAAGTGACCAGTTGGGTGAGTCTTCCGCGGTTGAGTTAACGGGAAAGATCATGGTGGTGGCCGTTATAGTCTTGTTCATGGTGGTTGTGTTTGTGCTGTTCCTTCATCTCTACGCCAAATGGTTCTGGTGGACAATTGGAGAGAGCAACATTCCTCAACCCAGAAGGCGGCGCCGCCGCTTTGTGTTTGCTCCTGCTCAAGATCCCCCCAACTACGGCGTTGTCCGAAGAGGCCTTGACCCTTCTGTGCTGAGATCACTGCCTGTATTGGTGTTCCAGCCACAAGATTTCAAGGAAGGTATGGAATGTGCTGTTTGTTTGTCTGAGGTTGGAGAGGGAGAGAAGGCGAGGCTTCTACCAAAATGCAACCATGGCTTCCACGTGGATTGCATTGATATGTGGTTCCAATCCCATTCCACTTGCCCTCTCTGCAGAAACCCTGTCACCTCTGCTGCCACTGAATCTTCTTCTTCCGAGGCAGCTTTTCCCACAAATGTCTTTGTCTGGGGGAACCAGGCCCAAGTGAGTTCTAATGGTGCTTCTTCTTCCTCTTCAGCAGCAGCTGCTAGCAGCAGTGACAGAGTTGGATCCTTGGTGATTGATATACCAAGAGAGATCACTTCATCTTCTGCTGCAAGCAGGTTTTCCGAAGAAGATGAGATGAAATCACCCATTACAGGAAGATTGAAGTCATTGAAGAGGTTATTGAGCAGGGACAGGAGGATGAATCCTTCTAGTCCCCGTTCTATAGACATTGAACAAGCAGCGGGAGCAGGACAGAGCTAG 804 0.4988 MGDSSLPSDQLGESSAVELTGKIMVVAVIVLFMVVVFVLFLHLYAKWFWWTIGESNIPQPRRRRRRFVFAPAQDPPNYGVVRRGLDPSVLRSLPVLVFQPQDFKEGMECAVCLSEVGEGEKARLLPKCNHGFHVDCIDMWFQSHSTCPLCRNPVTSAATESSSSEAAFPTNVFVWGNQAQVSSNGASSSSSAAAASSSDRVGSLVIDIPREITSSSAASRFSEEDEMKSPITGRLKSLKRLLSRDRRMNPSSPRSIDIEQAAGAGQS 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241684g00039 267 CDD RING-H2_EL5-like 108 151 - -
Stsc241684g00039 267 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 18 171 - -
Stsc241684g00039 267 MobiDBLite consensus disorder prediction 216 267 - -
Stsc241684g00039 267 ProSiteProfiles Zinc finger RING-type profile. 109 151 IPR001841 -
Stsc241684g00039 267 MobiDBLite consensus disorder prediction 221 252 - -
Stsc241684g00039 267 SMART ring_2 109 150 IPR001841 -
Stsc241684g00039 267 Pfam Ring finger domain 108 151 IPR001841 -
Stsc241684g00039 267 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 86 161 IPR013083 -
Stsc241684g00039 267 FunFam RING-H2 finger protein ATL3 77 156 - -
Stsc241684g00039 267 SUPERFAMILY RING/U-box 89 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241684g00039 Stsc-Chr241684 185811 186614 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241684g00039 18 249 C3H Transcription Factor Family AT1G53820 40.476 7.63e-61 193
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241684g00039 - - adu:107491762 393.275