Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc241684g00039 | ATGGGAGACTCGTCGTTGCCAAGTGACCAGTTGGGTGAGTCTTCCGCGGTTGAGTTAACGGGAAAGATCATGGTGGTGGCCGTTATAGTCTTGTTCATGGTGGTTGTGTTTGTGCTGTTCCTTCATCTCTACGCCAAATGGTTCTGGTGGACAATTGGAGAGAGCAACATTCCTCAACCCAGAAGGCGGCGCCGCCGCTTTGTGTTTGCTCCTGCTCAAGATCCCCCCAACTACGGCGTTGTCCGAAGAGGCCTTGACCCTTCTGTGCTGAGATCACTGCCTGTATTGGTGTTCCAGCCACAAGATTTCAAGGAAGGTATGGAATGTGCTGTTTGTTTGTCTGAGGTTGGAGAGGGAGAGAAGGCGAGGCTTCTACCAAAATGCAACCATGGCTTCCACGTGGATTGCATTGATATGTGGTTCCAATCCCATTCCACTTGCCCTCTCTGCAGAAACCCTGTCACCTCTGCTGCCACTGAATCTTCTTCTTCCGAGGCAGCTTTTCCCACAAATGTCTTTGTCTGGGGGAACCAGGCCCAAGTGAGTTCTAATGGTGCTTCTTCTTCCTCTTCAGCAGCAGCTGCTAGCAGCAGTGACAGAGTTGGATCCTTGGTGATTGATATACCAAGAGAGATCACTTCATCTTCTGCTGCAAGCAGGTTTTCCGAAGAAGATGAGATGAAATCACCCATTACAGGAAGATTGAAGTCATTGAAGAGGTTATTGAGCAGGGACAGGAGGATGAATCCTTCTAGTCCCCGTTCTATAGACATTGAACAAGCAGCGGGAGCAGGACAGAGCTAG | 804 | 0.4988 | MGDSSLPSDQLGESSAVELTGKIMVVAVIVLFMVVVFVLFLHLYAKWFWWTIGESNIPQPRRRRRRFVFAPAQDPPNYGVVRRGLDPSVLRSLPVLVFQPQDFKEGMECAVCLSEVGEGEKARLLPKCNHGFHVDCIDMWFQSHSTCPLCRNPVTSAATESSSSEAAFPTNVFVWGNQAQVSSNGASSSSSAAAASSSDRVGSLVIDIPREITSSSAASRFSEEDEMKSPITGRLKSLKRLLSRDRRMNPSSPRSIDIEQAAGAGQS | 267 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc241684g00039 | 267 | CDD | RING-H2_EL5-like | 108 | 151 | - | - | |
Stsc241684g00039 | 267 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE ATL42 | 18 | 171 | - | - | |
Stsc241684g00039 | 267 | MobiDBLite | consensus disorder prediction | 216 | 267 | - | - | |
Stsc241684g00039 | 267 | ProSiteProfiles | Zinc finger RING-type profile. | 109 | 151 | IPR001841 | - | |
Stsc241684g00039 | 267 | MobiDBLite | consensus disorder prediction | 221 | 252 | - | - | |
Stsc241684g00039 | 267 | SMART | ring_2 | 109 | 150 | IPR001841 | - | |
Stsc241684g00039 | 267 | Pfam | Ring finger domain | 108 | 151 | IPR001841 | - | |
Stsc241684g00039 | 267 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 86 | 161 | IPR013083 | - | |
Stsc241684g00039 | 267 | FunFam | RING-H2 finger protein ATL3 | 77 | 156 | - | - | |
Stsc241684g00039 | 267 | SUPERFAMILY | RING/U-box | 89 | 156 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc241684g00039 | Stsc-Chr241684 | 185811 | 186614 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc241684g00039 | 18 | 249 | C3H Transcription Factor Family | AT1G53820 | 40.476 | 7.63e-61 | 193 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc241684g00039 | - | - | adu:107491762 | 393.275 |