Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241684g00036 ATGGATTCCATAAATTCGTTCAAGGGGTATGGGAAAGTGGACGAGGCAGAGCAGCAAGCCTTCCAGAAAAAGACTCGCAAGCGTCTCATCATCCTCATAGTCTCCTCCATAGTCCTCATAACCGTCATCATCGCCGCCGTACTAGGCACAGTTCTACACAACCGCCGTTCCTCCTCCTCCTCCTCCACGGATCCAACCCCTGCCTCCTCTCTCAAAGCAGTTTGTGATGTCACCCAGTACCCACACTCTTGCATGTCCAGCATCTCCTCCCTCCCAGACTACTCCAACACCACCACCGACCCACACCTCCTCTTCAGCCTCTCCCTCCGCGTCGCCATTAACGAGCTCTCCAGCCTCTCCCATTATCCTTCCAAGCTCCGCTCCTCCATCAAGGAACCTCGCCTCCAAAAGGCCATTGATGTCTGTTCTACCGTCCTCGCCGACGCCATTTCCAACTTCAACGACTCCGTTTCCTCCCTTGACACCGCCGGTAAGCTACCTTCTGCCACCAAGATCAGTGACATTAGGACCTGGGTGAGCGCCGCCATCACCAACCAAGACACCTGCTTGGACGCCCTCCAGGAGGTTAACTCCACCGCCGCCAACGCCGCCCTGGAGAACATGCAAACCGCCATGAAGAACTCCACGGAGTTCTCGAGCAACAGCCTGGCCATCGTGACGAAGATACTGGGGGTGCTCTCCAGATTCAACAGCCCGGTGCACGGACGGCGGCTTCTGGGGTTCCCGGAGTGGGTGGGGGCGGCGGAGCGGAGGCTGCTGCTGGATGATGGAAACACAACGACAGGAGCGACGACGCCTGATGCGGTGGTGGCTGCGGATGGGAGCGCGCAATACAAGACGATAAAGGAGGCGGTTCTTGCAGTGCAGAAGAAGAGCGAGAAGAGATTCGTGATATATGTGAAGGCAGGGACTTATGTTGAGAACATCGATTTGGATAAGAACACTTGGAATGTGATGATCTACGGTGATGGAATGGACAAGACCATCATCTCCGGCAGCCGCAACTTCATCGACGGCACTCCGACTTTTGAGACTGCCACTTTCGCTGCTAAGGGAAAGGGTTTCATTGCAAAGGACATAGGTTTCAAGAACACGGCAGGCGCAGACAAGCATCAGGCGGTGGCCTTCCGATCAGGGTCGGACCAATCGGTGTTCTACAGGTGCTCATTCGATGGCTTCCAGGACACACTGTACGCCCATTCCAACAGGCAGTTCTACCGCGACTGCGACATCACCGGCACCATTGACTTCATCTTCGGCAACGCCGCCGTGGTCTTCCAGAACTGCAGGATCATGCCTCGCCAGCCCCTCCCCAACCAGTTCAACACCATAACCGCACAGGGAAAGAAAGACCCCAACCAGGTTGCCGGCATCGTCATCCAGAAATGCTCCTTCGTTCCCTTCGCCAGTAATCTTCAGGCCCCCACCTACCTGGGCCGCCCTTGGAAGGACTTTTCCACCACCGTCATCATGCAGTCCAATATCGGCCCATTCTTGAACCCCTTGGGCTGGATAAGCTGGGTTGCCAATGTGGACCCACCAAAGACTATATTCTACGGTGAGTACCTCAACACTGGGCCTGGATCTGATGTCTCGAAACGGGTTACTTGGGCCGGCTACAACCCCTCTCTCACTGAAACCGATGCTGCCAAGTTCACTGTGCAGTCCTTTATTCAGGGCCCAGATTGGTTGCCAAATTCTGCTGTAACCTTTGACTCCACTCTCTAA 1749 0.5546 MDSINSFKGYGKVDEAEQQAFQKKTRKRLIILIVSSIVLITVIIAAVLGTVLHNRRSSSSSSTDPTPASSLKAVCDVTQYPHSCMSSISSLPDYSNTTTDPHLLFSLSLRVAINELSSLSHYPSKLRSSIKEPRLQKAIDVCSTVLADAISNFNDSVSSLDTAGKLPSATKISDIRTWVSAAITNQDTCLDALQEVNSTAANAALENMQTAMKNSTEFSSNSLAIVTKILGVLSRFNSPVHGRRLLGFPEWVGAAERRLLLDDGNTTTGATTPDAVVAADGSAQYKTIKEAVLAVQKKSEKRFVIYVKAGTYVENIDLDKNTWNVMIYGDGMDKTIISGSRNFIDGTPTFETATFAAKGKGFIAKDIGFKNTAGADKHQAVAFRSGSDQSVFYRCSFDGFQDTLYAHSNRQFYRDCDITGTIDFIFGNAAVVFQNCRIMPRQPLPNQFNTITAQGKKDPNQVAGIVIQKCSFVPFASNLQAPTYLGRPWKDFSTTVIMQSNIGPFLNPLGWISWVANVDPPKTIFYGEYLNTGPGSDVSKRVTWAGYNPSLTETDAAKFTVQSFIQGPDWLPNSAVTFDSTL 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241684g00036 582 FunFam Pectinesterase 67 230 - -
Stsc241684g00036 582 CDD PMEI-like_3 73 229 - -
Stsc241684g00036 582 Pfam Plant invertase/pectin methylesterase inhibitor 70 225 IPR006501 GO:0004857
Stsc241684g00036 582 FunFam Pectinesterase 268 582 - -
Stsc241684g00036 582 SMART PMEI_2 66 225 IPR006501 GO:0004857
Stsc241684g00036 582 ProSitePatterns Pectinesterase signature 1. 299 318 IPR018040 -
Stsc241684g00036 582 Gene3D - 268 582 IPR012334 -
Stsc241684g00036 582 Pfam Pectinesterase 274 567 IPR000070 GO:0030599|GO:0042545
Stsc241684g00036 582 NCBIfam pectinesterase inhibitor domain 46 229 IPR006501 GO:0004857
Stsc241684g00036 582 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 70 230 IPR035513 -
Stsc241684g00036 582 Gene3D Invertase/pectin methylesterase inhibitor family protein 67 229 IPR035513 -
Stsc241684g00036 582 PANTHER PECTINESTERASE 39 572 - -
Stsc241684g00036 582 SUPERFAMILY Pectin lyase-like 270 579 IPR011050 -
Stsc241684g00036 582 ProSitePatterns Pectinesterase signature 2. 418 427 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241684g00036 Stsc-Chr241684 171625 174805 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241684g00036 1 576 Carbohydrate Esterase AT1G53840 59.022 0.0 685
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241684g00036 - - gmx:100777128 843.188