Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241684g00034 ATGTGGTGGAGATCAGCATCGTTCATACTAGACAGGCAGCAGAATGACGAGGCTCTGAGGCAGGACACATCCTCCACCATCACTCCTCCGCCGCCAACTGAATCCTCCATGGCGATGGGATTGGCCACCGACCACAACCCTAACAACATCTCTGCTTACTACCAGACAAGGGCCGCCCACCACGCCGTCGTTACCAGCGACTGGCTCGCCCAGGCACAGGCTGCCACCACTCCCCACGACCCCCCTCAATCCACCTCCGCCGCAGATCCCGACAAGCCCTTCAGCGTTATCGACGAGTTCAACAACTGGCGCAGACTGCCTGACTTGGCTGAGGCCGTCGCCGCCATTCGCGCCCTCGCCGCTGTCATCAGGTCCAGCCAAGCCTCCACTATGATGCAGCTTGAAATCGAGCTCAAGAAGGCCTCCGATTCTCTCAAAGCTTGGGATACGACTTCAATCTCGTTGACTGCTGGGTGTGATCTGTTCATGCGGTATGTGACGAGGACCTCTGCTTTGGAATATGAGGACTTTAATTCAGCTAAGTCTCGATTAATCGAGCGCGCTGAGAAGTTCGGCGAAATCTCCCACAAGGCCAGGAAAATTATTGCCATGTTGAGTCAAGAGTTTATATTTGATGGCTGTACAATTTTAGTCCATGGCTTTTCCAGGGTTGTCTTTGAAGTTCTAAAACTGGCAGCACAAAATAAAAAGCTCTTTAGAGTCTTCTGCACAGAGGGAAGACCGGATCGAACAGGTTTAAGGTTATCAAATGAGTTGGCAAAGCTTGATGTTCCCGTGAAGATTGTAATAGACTCTGCTGTTGCATATACTATGGATGAGGTGGACATGGTTTTTGTGGGCGCAGATGGTGTTGTTGAAAGTGGTGGCATAATTAACATGATGGGGACTTATCAAATCGCATTGGTTGCCAATAGTATGAACAAGCCAGTTTATGTTGCTGCTGAAAGCTATAAGTTTGCTCGTCTTTACCCTCTTGACCAGAAAGACTTGGCTCCTGCCTTGCGCCCTATTGATTTTGGTGTACCGATTCCATCCAAGGTTGAAGTTGAAAGGTCTGCCAGGGATTACACTCCTCCTCAATATCTGACTCTGCTTTTCACAGATTTAGGTGTTCTTACTCCATCAGTTGTTAGTGATGAGCTGATCCAGTTATACTTATAG 1182 0.4924 MWWRSASFILDRQQNDEALRQDTSSTITPPPPTESSMAMGLATDHNPNNISAYYQTRAAHHAVVTSDWLAQAQAATTPHDPPQSTSAADPDKPFSVIDEFNNWRRLPDLAEAVAAIRALAAVIRSSQASTMMQLEIELKKASDSLKAWDTTSISLTAGCDLFMRYVTRTSALEYEDFNSAKSRLIERAEKFGEISHKARKIIAMLSQEFIFDGCTILVHGFSRVVFEVLKLAAQNKKLFRVFCTEGRPDRTGLRLSNELAKLDVPVKIVIDSAVAYTMDEVDMVFVGADGVVESGGIINMMGTYQIALVANSMNKPVYVAAESYKFARLYPLDQKDLAPALRPIDFGVPIPSKVEVERSARDYTPPQYLTLLFTDLGVLTPSVVSDELIQLYL 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241684g00034 393 Pfam Initiation factor 2 subunit family 110 381 IPR000649 GO:0044237
Stsc241684g00034 393 Gene3D - 197 393 IPR042529 -
Stsc241684g00034 393 Coils Coil 131 151 - -
Stsc241684g00034 393 MobiDBLite consensus disorder prediction 73 92 - -
Stsc241684g00034 393 FunFam Translation initiation factor eIF-2B subunit alpha 92 194 - -
Stsc241684g00034 393 SUPERFAMILY NagB/RpiA/CoA transferase-like 108 392 IPR037171 -
Stsc241684g00034 393 MobiDBLite consensus disorder prediction 73 90 - -
Stsc241684g00034 393 MobiDBLite consensus disorder prediction 14 35 - -
Stsc241684g00034 393 PANTHER TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT ALPHA 60 393 - -
Stsc241684g00034 393 Gene3D - 93 194 IPR042528 -
Stsc241684g00034 393 FunFam Translation initiation factor eIF-2B subunit alpha 197 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241684g00034 Stsc-Chr241684 166895 169297 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241684g00034 1 393 Eukaryotic Initiation Factors Gene Family AT1G53880 79.135 0.0 609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241684g00034 K03239 - qsa:O6P43_027485 642.114