Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241684g00032 ATGTGTGGAGGTGCTATTATCTCCGACTTCATTCCGGCGGCAGCGGCGCTCACAGCTAAGTCTCGCCGCCTCACAGCGGAGTACCTGTGGCCTGACCTGAAGAAAGGCAGCTCAGCGAAACGCGTGCCCAAGGCAGCGGTGATCGACCTCGACGATGATTTCGAGGCCGATTTCAGGGAATTCAAGGACGACTCCGACATCGACATTGACGACGATGAGGATGATGCCAAGCCCTTTGCTTTCGCTGCCGCCAAAGCTCCCAAGTCCATATCCCCTGGAAAATCTGTGGTGGTCAAAGCACAATCTGAGAAGCCTGCAAAGAGAAAGAGGAAGAATCAGTATAGGGGAATCCGTCAGCGTCCTTGGGGGAAATGGGCGGCTGAGATCCGTGATCCAAGAAAGGGTGTTCGTGTCTGGCTAGGAACCTTCAACACTGCCGAAGAGGCTGCCAGAGCTTATGATGCTGAAGCACGGAGGATTCGTGGCAAGAAAGCCAAGGTGAATTTCCCTGAAGAGGCACCACGCACTCCTCCAAAACGTGCCAGGCCAAATCTGAACACTGTTCAGCCCAATCTGAGATATAGATTCAATGCTGGTAACGATGTGGAGAACTATGGTCCTCTAAATGTGGTTGAACAGAAACCACTGGTTAACCAGACTGCTAACATGGATTCCTTTCCTGAGGGTGGAAATAGTTTCGCATCCCTTACCTCACCTGATGATGTGACCCTTTACTTTGGTTCAGATCAGGGAAGTAATACATTTGATTATTCAGATCTTCATTGGGGTGAGGCCCCAAAGACTCCCGAGATCTCATCCATGCTTTCTGCTGCTTTGGAAGGGGAATCTCATTTTGTGCAAGATGCTAGCCAACAGAAAAATCTGCAGTCTAACTCACAGAATGTAGTACCTTTGAAAGATGATTCTGCAAGGACTCTGTCTGAGGAGCTTGTGGATATTGAATCTGATTTGAAATTCTTTCAGATGCCTTTTCTTGAAGGGAGCTGGGATGATACTTCATTGGAATCATTGCTAGCTGAAGACACCATTCAGGATGGGGGAAACCTGATGGACATGTGGAGCTTTGATGACATTCCTTCCATGGCTGGTGGAGTGTTCTGA 1122 0.4911 MCGGAIISDFIPAAAALTAKSRRLTAEYLWPDLKKGSSAKRVPKAAVIDLDDDFEADFREFKDDSDIDIDDDEDDAKPFAFAAAKAPKSISPGKSVVVKAQSEKPAKRKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDAEARRIRGKKAKVNFPEEAPRTPPKRARPNLNTVQPNLRYRFNAGNDVENYGPLNVVEQKPLVNQTANMDSFPEGGNSFASLTSPDDVTLYFGSDQGSNTFDYSDLHWGEAPKTPEISSMLSAALEGESHFVQDASQQKNLQSNSQNVVPLKDDSARTLSEELVDIESDLKFFQMPFLEGSWDDTSLESLLAEDTIQDGGNLMDMWSFDDIPSMAGGVF 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241684g00032 373 Gene3D AP2/ERF domain 112 171 IPR036955 GO:0003700|GO:0006355
Stsc241684g00032 373 SMART rav1_2 113 176 IPR001471 GO:0003700|GO:0006355
Stsc241684g00032 373 ProSiteProfiles AP2/ERF domain profile. 113 170 IPR001471 GO:0003700|GO:0006355
Stsc241684g00032 373 MobiDBLite consensus disorder prediction 94 116 - -
Stsc241684g00032 373 SUPERFAMILY DNA-binding domain 113 171 IPR016177 GO:0003677
Stsc241684g00032 373 PANTHER DNA-BINDING DOMAIN 87 287 IPR044808 GO:0003700|GO:0009873
Stsc241684g00032 373 Pfam AP2 domain 113 162 IPR001471 GO:0003700|GO:0006355
Stsc241684g00032 373 CDD AP2 113 171 IPR001471 GO:0003700|GO:0006355
Stsc241684g00032 373 PRINTS Ethylene responsive element binding protein signature 136 152 IPR001471 GO:0003700|GO:0006355
Stsc241684g00032 373 PRINTS Ethylene responsive element binding protein signature 114 125 IPR001471 GO:0003700|GO:0006355
Stsc241684g00032 373 FunFam Ethylene-responsive transcription factor 2 112 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241684g00032 Stsc-Chr241684 159936 162187 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241684g00032 1 373 AP2-EREBP Transcription Factor Family AT3G14230 44.310 1.78e-67 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Stsc241684g00032 AP2 1.9e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241684g00032 K09286 - gmx:100170723 432.18