Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241684g00010 ATGCAGTCGGCCCTTACCGGAGAATCTCTACCTGTCACAAAGAGAACAGGTGATGAGGTATTTTCAGGTTCAACATGTAAGCAGGGAGAGATTGAAGCTGTAGTGATAGCAACAGGAGTTAATTCCTTTTTCGGAAAGGCGGCGCATTTGGTCGATAGCACAGAAGTTGTTGGGCACTTTCAGAAGGTCCTTACTTCAATTGGTAACTTCTGCATTTGCTCTATAGCTATAGGGATGCTTCTTGAAATAATCATAATGTTCCCAGTGGAGCATCGTTCATACCGGGATGGAATTAACAACCTTCTTGTTCTCCTGATTGGAGGAATTCCCATTGCCATGCCTACAGTGCTGTCTGTGACACTTGCAATTGGCTCTCATCGTCTTTCTCAGCAGGGAGCCATCACAAAGAGAATGACAGCTATCGAAGAAATGGCCGGAATGGATGTCCTATGTAGTGATAAAACTGGAACTCTTACACTAAACCGCTTATCCGTTGATCGAAACCTTGTAGAGGTCTTTCACAGAAACATGGACAGAGATATGGTTATTCTATTAGCAGCCAGGGCTTCCAGATTGGAAAACCAAGATGCCATTGACAGTGCCATTGTTAACATGCTAGCTGATCCAAAGGAGGCACGTGCAAACATTACTGAGCTTCATTTTCTACCTTTCAATCCAGTAGATAAACGCACAGCAATCACATATATTGATTCAGATGGTAACTTTTACAGGGCCAGCAAAGGAGCACCCGAACAGATTCTAAGTTTGTGCCAAGAGAAAGAAGAGATTGCTAGAAGAGTGCATGCAATCATTGACAAATTTGCCGAGAGGGGACTTCGATCTCTTGCAGTGGCTTATCAGGAAATTCCTGAAAAATCCAAGGATGGTTCTGGAGGTCCATGGACATTTTGTGGTTTGTTGCCTCTTTTTGATCCTCCAAGACATGACAGTGCTGAGACCATCAGAAGAGCACTTAACCTGGGAGTCTGTGTTAAGATGATCACAGGGGATCAGCTGGCAATTGCAAAGGAGACTGGCCGAAGACTCGGTATGGGGACAAACATGTATCCTTCTTCATCTCTATTGGGACGTGAAAAAGATGAAAATGAAGCACTCCCCGTCGACGAGCTCATCGAACAGGCAGATGGCTTTGCTGGTGTATTTCCTGAACACAAATATGAAATAGTGAAAATTTTGCAAGAAAAGAAGCATGTAGTTGGAATGACAGGAGATGGAGTGAATGATGCCCCAGCACTGAAGAAAGCAGACATTGGAATAGCTGTGTCAGATGCTACAGATGCTGCGAGAGGTGCCGCGGATCTGGTCTTAACTGAGCCTGGATTAAGTGTGATCATCAGCGCAGTCTTAACTAGCAGAGCTATATTTCAAAGAATGAAAAATTATACAATATATGCTGTTTCCATCACCATAAGGATAGTGCTTGGTTTTGTGCTCCTAGCTTTGATTTGGGAGTTTGATTTCCCACCCTTCATGGTCCTTATTATTGCAATACTAAATGATGGTACTATCATGACCATATCTAAAGACAGAGTGAAGCCATCTCCTACACCTGATAGCTGGAAGCTGCCAGAGATATTTGCCACAGGAATTGTGATTGGCACATACCTTGCTTTGGTCACTGTCCTATTCTACTGGGCAGTAGTTGACACCACTTTCTTTGAGACTCACTTCCATGTAGCCTCCTTATCCAGTGACAGTGAGAAAGTTGCATCAGCTGTATATCTGCAAGTTAGCATAATCAGCCAGGCTTTAATTTTCGTGACTCGCAGCCGCGGCTGGTCATTCCTAGAGAGACCAGGAGTTCTACTAATGTGTGCCTTTGTAATAGCTCAACTGGTAGCCACCTTAATTGCTGTGTATGCACACATCAGTTTTGCTTATATCAGAGGAATTGGATGGAAGTGGGCTGGTGTTATATGGTTATATAGTTTAGTGTTCTATGTGCCTTTGGACATCATTAAGTTCATAGTGCGCTATGCTTTGAGTGGTGAAGCCTGGAATCTGGTATTTGACAGGAAGACTGCTTTTACATCAAAGAAAGACTATGGCACGGAAGACAGGGCTGCAAAGTGGGTTCTTTCTCAGAGGAGTCTGCAAGGACTCATGGCCGTGGACCTCGGTGCCAATGAGAGGAGATCCTCTTTGATAGCTGAACAAGCCAAGCGTCGTGCCGAAATCGCCAGGTAA 2208 0.442 MQSALTGESLPVTKRTGDEVFSGSTCKQGEIEAVVIATGVNSFFGKAAHLVDSTEVVGHFQKVLTSIGNFCICSIAIGMLLEIIIMFPVEHRSYRDGINNLLVLLIGGIPIAMPTVLSVTLAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNRLSVDRNLVEVFHRNMDRDMVILLAARASRLENQDAIDSAIVNMLADPKEARANITELHFLPFNPVDKRTAITYIDSDGNFYRASKGAPEQILSLCQEKEEIARRVHAIIDKFAERGLRSLAVAYQEIPEKSKDGSGGPWTFCGLLPLFDPPRHDSAETIRRALNLGVCVKMITGDQLAIAKETGRRLGMGTNMYPSSSLLGREKDENEALPVDELIEQADGFAGVFPEHKYEIVKILQEKKHVVGMTGDGVNDAPALKKADIGIAVSDATDAARGAADLVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFVLLALIWEFDFPPFMVLIIAILNDGTIMTISKDRVKPSPTPDSWKLPEIFATGIVIGTYLALVTVLFYWAVVDTTFFETHFHVASLSSDSEKVASAVYLQVSIISQALIFVTRSRGWSFLERPGVLLMCAFVIAQLVATLIAVYAHISFAYIRGIGWKWAGVIWLYSLVFYVPLDIIKFIVRYALSGEAWNLVFDRKTAFTSKKDYGTEDRAAKWVLSQRSLQGLMAVDLGANERRSSLIAEQAKRRAEIAR 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241684g00010 735 Gene3D - 2 38 - -
Stsc241684g00010 735 NCBIfam HAD-IC family P-type ATPase 384 496 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc241684g00010 735 NCBIfam HAD-IC family P-type ATPase 2 358 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc241684g00010 735 PRINTS H+-transporting ATPase (proton pump) signature 581 602 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc241684g00010 735 PRINTS H+-transporting ATPase (proton pump) signature 267 285 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc241684g00010 735 PRINTS H+-transporting ATPase (proton pump) signature 381 397 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc241684g00010 735 PRINTS H+-transporting ATPase (proton pump) signature 409 425 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc241684g00010 735 PRINTS H+-transporting ATPase (proton pump) signature 440 465 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc241684g00010 735 Gene3D - 148 446 IPR023214 -
Stsc241684g00010 735 SFLD p-type atpase 133 461 IPR044492 -
Stsc241684g00010 735 SUPERFAMILY Calcium ATPase, transmembrane domain M 51 668 IPR023298 -
Stsc241684g00010 735 SFLD Haloacid Dehalogenase 133 461 - -
Stsc241684g00010 735 PRINTS P-type cation-transporting ATPase superfamily signature 432 444 - -
Stsc241684g00010 735 PRINTS P-type cation-transporting ATPase superfamily signature 151 165 - -
Stsc241684g00010 735 PRINTS P-type cation-transporting ATPase superfamily signature 327 337 - -
Stsc241684g00010 735 PRINTS P-type cation-transporting ATPase superfamily signature 409 428 - -
Stsc241684g00010 735 PRINTS P-type cation-transporting ATPase superfamily signature 1 14 - -
Stsc241684g00010 735 PRINTS P-type cation-transporting ATPase superfamily signature 305 316 - -
Stsc241684g00010 735 ProSitePatterns E1-E2 ATPases phosphorylation site. 153 159 IPR018303 -
Stsc241684g00010 735 NCBIfam plasma-membrane proton-efflux P-type ATPase 2 627 IPR006534 GO:0008553|GO:0016020|GO:0120029
Stsc241684g00010 735 Gene3D - 39 636 - -
Stsc241684g00010 735 SUPERFAMILY HAD-like 147 456 IPR036412 -
Stsc241684g00010 735 Pfam haloacid dehalogenase-like hydrolase 147 423 - -
Stsc241684g00010 735 FunFam Plasma membrane ATPase 303 457 - -
Stsc241684g00010 735 Pfam E1-E2 ATPase 2 130 - -
Stsc241684g00010 735 Gene3D - 163 310 IPR023299 GO:0000166
Stsc241684g00010 735 PANTHER CALCIUM-TRANSPORTING ATPASE 2 703 - -
Stsc241684g00010 735 FunFam ATPase 4 plasma membrane-type 399 636 - -
Stsc241684g00010 735 SUPERFAMILY Calcium ATPase, transduction domain A 2 51 IPR008250 -
Stsc241684g00010 735 CDD P-type_ATPase_H 2 662 IPR006534 GO:0008553|GO:0016020|GO:0120029
Stsc241684g00010 735 FunFam Plasma membrane ATPase 163 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241684g00010 Stsc-Chr241684 61013 64218 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241684g00010 2 735 Primary Pumps ATPases AT1G17260 82.289 0.0 1257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241684g00010 K01535 - csav:115707204 1317.75