Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241684g00004 ATGGAGTTGTCACTAGGGAGTGGGAGTGGGAGCGGAAGCAGCAAAGACGATAGGAATTGGCAACAAGGAGGAGGAGGAGTTGTTGGTTCTTGCTCAACATCATCGTCGGAGGCGGTGGAGAAAGAGCACATGTTCGACAAAGTGGTGACCCCAAGCGACGTAGGGAAGCTGAACAGGCTAGTGATACCGAAGCAGCACGCAGAAAAGTACTTTCCGTTGGACGCATCTTCCAACGACAAGGGCCTTCTCCTCAACTTCGAGGACCGAAACGGCAAGCTTTGGCGCTTCAGGTACTCCTACTGGAACAGCAGCCAAAGCTATGTCATGACCAAAGGCTGGAGCCGCTTCGTTAAGGAGAAGAAGCTCGACGCCGGCGACATTGTCTCCTTCCACCGTGGCCTCGGCGAACTCTATAGGCACAGGTTGTACATTGACTGGAGGCGCAGGCCTGACCATCCCCCTCCTGACCCTTCCGCCTCTCTCATCTCCCCTTTCTTCTTTCCTAATCACTACTCCGCCATCACATGGGGCGGCGCCCCCGGCAGGTTCTACTCTCTGCCTTCTCCCACTCATCCTCCTCCTCCTCCTCCTCCTCGCCACCACCACTTTCATCATCAGCAGCAGCACCACCACCTCGCTACTAATTACAACACCCATATGTACGGGTTTCATCATCATCCTGGTTCCGCAACTGGAACAAGCCATCATCATCATCATCATCTCAGCGGCTATAATGAGCATCATCATCAGCAGCAGCTGAATTCCGGATCTGGCGGAGCCGGACCGCTTTATTACCTGAGGTCAAGCCCCTCAATGTCAATTTTTGACCCCAGCAGCTTTCATCAAGAGAGAGGGCCTGCTATTGCTCCCATGATCATTGATTCCGTGCCGGTTGCTCATCATCATCACCAACAGCAACAGCAACATCAACATGGTGTGGTGTCTACTAATAGTAGTAACTATGACAGTACTAGTAGTAGTAGTAGTGCAGGAAAACGACTAAGGCTATTTGGGGTCAACATGGAATGTGCTGCTTCTTCTTCTTCTTCGGCAGCAGTTGAAGATCACTCACAGGTGGCAATGCCTGATTCATCACCATCTACAAGCAGGTTTGGGGATCAGAGAGGGGATCCTACTACTTCTGTGCTTTTTGATTTAGATCCCTCTTTGCAATACCACCACCGGCACTGA 1191 0.5181 MELSLGSGSGSGSSKDDRNWQQGGGGVVGSCSTSSSEAVEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDASSNDKGLLLNFEDRNGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFHRGLGELYRHRLYIDWRRRPDHPPPDPSASLISPFFFPNHYSAITWGGAPGRFYSLPSPTHPPPPPPPRHHHFHHQQQHHHLATNYNTHMYGFHHHPGSATGTSHHHHHHLSGYNEHHHQQQLNSGSGGAGPLYYLRSSPSMSIFDPSSFHQERGPAIAPMIIDSVPVAHHHHQQQQQHQHGVVSTNSSNYDSTSSSSSAGKRLRLFGVNMECAASSSSSAAVEDHSQVAMPDSSPSTSRFGDQRGDPTTSVLFDLDPSLQYHHRH 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241684g00004 396 FunFam B3 domain-containing protein 38 158 - -
Stsc241684g00004 396 MobiDBLite consensus disorder prediction 230 244 - -
Stsc241684g00004 396 MobiDBLite consensus disorder prediction 300 329 - -
Stsc241684g00004 396 MobiDBLite consensus disorder prediction 349 396 - -
Stsc241684g00004 396 Pfam B3 DNA binding domain 45 149 IPR003340 GO:0003677
Stsc241684g00004 396 MobiDBLite consensus disorder prediction 349 376 - -
Stsc241684g00004 396 Gene3D - 38 153 IPR015300 -
Stsc241684g00004 396 ProSiteProfiles B3 DNA-binding domain profile. 45 150 IPR003340 GO:0003677
Stsc241684g00004 396 SUPERFAMILY DNA-binding pseudobarrel domain 42 150 IPR015300 -
Stsc241684g00004 396 MobiDBLite consensus disorder prediction 299 329 - -
Stsc241684g00004 396 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 30 351 IPR044800 GO:0003700
Stsc241684g00004 396 MobiDBLite consensus disorder prediction 1 33 - -
Stsc241684g00004 396 MobiDBLite consensus disorder prediction 226 256 - -
Stsc241684g00004 396 SMART B3_2 45 150 IPR003340 GO:0003677
Stsc241684g00004 396 CDD B3_DNA 43 132 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241684g00004 Stsc-Chr241684 33056 35777 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241684g00004 35 346 RAV Transcription Factor Family AT2G46870 46.708 4.61e-77 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc241684g00004 B3 4e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241684g00004 K09287 - gmx:100781424 336.65