Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241684g00002 ATGAAAATAGGAGATTTTGGTTTTGCAAGGTCTCTCACACCCCAGGGTTTGGCTGACACTCTGTGTGGTTCACCATTATACATGGCTCCAGAGATAATTCAAAACCAAAAGTATGATGCCAAGGCTGATTTATGGAGTGTGGGGGCAATATTGTTCCAACTAGTAACTGGAAAGCCGCCATTTGATGGAAATAGTCAATTGCAGCTTTTTCAAAACATTTTGACATCTACTGGGCCACAGTTTCCCCCAGAGGCTTTAAAAGAGCTACATTCTGATTGCTTGGATCTTTGCAGAGGTCTTTTACGTCAAAACCCAGTTGAGCGATTAACGTTCAAGGAGTTCTTCAATCACAATTTCCTTCAGGAACCCAGGCAGTCTTTATTGCATCCATCGGAGAGATTCGAGGTTCAACACTTGGTTACCTCCACTTCTGACAACATGTTTCAATTGCATTCCGGGCATCATGTTGAGTCATTAGTAGATGATCCAGTTGTACTCAGTTCTGTTCTCAATGATACTCTGGCATTGCAAAGAAATACCAGGAAGAAAACAATTGGCATTCAGACTGTTGAGACGTCTGGTTTTGGTGGTTCTCGTTTGTCAAAACAACCTCAAGTTTCTCGTTTAATGGAGTCCATTGAGAAGGATTATGTCCTAGTCAATCATCATTTTGCATCATTGGAAGCTTTCTCTGATTACTTTGAGGCATCTGTGCAAGATAATTCCATTTGCAAGGTTTCTATTTGCACTTCTAAGAGGCCTAACGTGGAAACTGGTGTTCCAATGCAAACAAACGATCCATCCCTTTGCCACGCTGGTCAATTAGAAGATAAAAAAAGCAGCGAACATGTGGCATTAGAGGCATCCTATGCATTTGATGTCTTAAGTAAAATGCAAGGAACTTCCTCGTTGAGCCCTTCAAACAGGTTAGAGTTCTTGCATCTGTATGTGCAGATCCTTGCGGAGCTTTCATGTGAAAAGTACAATGCACAATTATATCTGGAATCATTTGCAGTTGAGTTAGTAGTTTTGGCTATATGGAAGAAAGCTCTAGAAGTTTGTAAATCTTGGATGGACTCTATTAATAAGGGTGTGTTGCCTGCAAGCACTTCGGCCAATGAGACTGGAATTTCCTATGGAGATGTTGGTTCATCACAAAACATGGAAAAGAAAATAAATTTCTGTGATCCTATGTCAGTCTACATGTGGGCAAAAGAGGGGTTTATTGCTGCAGTTGATAGCGCTGAGAAACTGTCACGTCATATTCAAAATATGGATGGTAGGACTGCTTTTTATTGCAGGGAATATTGTAGTCCTTCTATATTATCCAAGTAG 1335 0.4067 MKIGDFGFARSLTPQGLADTLCGSPLYMAPEIIQNQKYDAKADLWSVGAILFQLVTGKPPFDGNSQLQLFQNILTSTGPQFPPEALKELHSDCLDLCRGLLRQNPVERLTFKEFFNHNFLQEPRQSLLHPSERFEVQHLVTSTSDNMFQLHSGHHVESLVDDPVVLSSVLNDTLALQRNTRKKTIGIQTVETSGFGGSRLSKQPQVSRLMESIEKDYVLVNHHFASLEAFSDYFEASVQDNSICKVSICTSKRPNVETGVPMQTNDPSLCHAGQLEDKKSSEHVALEASYAFDVLSKMQGTSSLSPSNRLEFLHLYVQILAELSCEKYNAQLYLESFAVELVVLAIWKKALEVCKSWMDSINKGVLPASTSANETGISYGDVGSSQNMEKKINFCDPMSVYMWAKEGFIAAVDSAEKLSRHIQNMDGRTAFYCREYCSPSILSK 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241684g00002 444 SMART serkin_6 1 120 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241684g00002 444 Gene3D Transferase(Phosphotransferase) domain 1 1 161 - -
Stsc241684g00002 444 ProSiteProfiles Protein kinase domain profile. 1 120 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241684g00002 444 Pfam Protein kinase domain 1 120 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241684g00002 444 PANTHER SERINE/THREONINE-PROTEIN KINASE UNC-51-RELATED 2 389 IPR045269 GO:0004674|GO:0006914
Stsc241684g00002 444 SUPERFAMILY Protein kinase-like (PK-like) 2 142 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241684g00002 Stsc-Chr241684 442 3383 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241684g00002 1 122 CBL-interacting serine-threonine protein kinases AT1G30270 36.434 2.05e-17 82.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-3 Stsc241684g00002 Pkinase 1.7e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241684g00002 - K08269 pcin:129288152 502.671