Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241683g00017 ATGGTGAGGGGAAAGATTGAGATGAAGAGAATAGAGAATGAGTGTAACCGAAAAGCGACGTTTGCAAAGCGAACAAGTGGTCTTTTAAAGAAAGCTCATGAATTATCTGTTTTGTGTGATGCACAAGTTGGTGTGATAATATTTTCCCAAAACGGAAATTTGTTTGAGTTCGAATCAACTTCTTCTCACATTTCAAATATACTGGAACGCTACCATGAATATACCGGAGAGTTTCCACCCAACAAGTTTGGAGAAGATTATATCCAGCAACTCAAGTTTGACTCCGCAACCTTGGAAGAAAAAATTGAGATTCTTGAACTTTCTAGAAGGAAGATGCTGGGGCATTGCTTGAGTTCTTGCTCTTTCGATGAACTCCAACAAGTGGAGAACAAGCTCCACGCAAGTTTGCAATGCATCCGTGTCAGAAAGACTCAGCTATTTAAGGAGGAAACTGAACAACTACAGAGCAAGGAGAGAAACTTGCTCAAAGAAAACGTCAGATTAAGTGCAATGGTGAGATCCTTTAATAATCAGTACATGATCAATGATTTTGTTTAA 558 0.3889 MVRGKIEMKRIENECNRKATFAKRTSGLLKKAHELSVLCDAQVGVIIFSQNGNLFEFESTSSHISNILERYHEYTGEFPPNKFGEDYIQQLKFDSATLEEKIEILELSRRKMLGHCLSSCSFDELQQVENKLHASLQCIRVRKTQLFKEETEQLQSKERNLLKENVRLSAMVRSFNNQYMINDFV 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241683g00017 185 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 156 - -
Stsc241683g00017 185 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Stsc241683g00017 185 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Stsc241683g00017 185 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Stsc241683g00017 185 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc241683g00017 185 SUPERFAMILY SRF-like 3 77 IPR036879 GO:0003677|GO:0046983
Stsc241683g00017 185 Coils Coil 88 108 - -
Stsc241683g00017 185 CDD MADS_MEF2_like 3 76 IPR033896 GO:0000977|GO:0045944
Stsc241683g00017 185 Gene3D - 13 78 IPR036879 GO:0003677|GO:0046983
Stsc241683g00017 185 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Stsc241683g00017 185 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Stsc241683g00017 185 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Stsc241683g00017 185 Pfam K-box region 89 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241683g00017 Stsc-Chr241683 102808 107056 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241683g00017 1 172 MADS-box Gene Family AT5G51860 51.149 2.71e-54 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Stsc241683g00017 K-box 8.3e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241683g00017 - - adu:107467111 298.516