Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241683g00003 ATGAGCACAACACCAGAAACACCAATCACCACGCTAACACACACCTACCCGCCAGCAGTCACTGTACTTTGTCTTGCCACAAAGACAAGAAGTACCCGACGGGAACCCGCACTAATAGGGCAACTGCAGTCGGGGTTCTGGAAGGCCACCGGGCGTGACAATGTGATATACAGTAACGGGAAGAGGATTGGATTGGGGAAGACATTGGTATTCTATAGAGGAAGAGCCCCTCATGGCCAAAAATCTAACTGGATCATGCATGAGTATAGGCTTGATGACAACACCACCAACGATGCCAATATCGTTTCAAATGCGATGGAAGATGGAGCACAAGAAGAAGGGTGGGTGGTGTGTAGGATATTCAAGAAGAATAACCATCTAAAAACCCTAGAGAGCCCTTTAACCTCTTCCATCTCCGACAGCATCGGAGGTAGCAGCAGCCATCACCACAACCACCATCACTTGCTCGACGACTCGTGCAACGAGGGTGCCTTAGACCAAATTCTCCAGCAAATGGGAAGAGGCGGTGGTGGTGGTTGCGAGGAAGAGAACAACTACGACCAACCCAACAACAACTATGGTGGAGGGTACCATAATAATAATGGTAGCAGGTTCTTGAAGCTTCCAAGCCTAGAGAGTCCAAAATCAACAAGCATGGATAATAATAATAATAATAATAATAATAATAATAATAATAATAAGGGATAA 708 0.459 MSTTPETPITTLTHTYPPAVTVLCLATKTRSTRREPALIGQLQSGFWKATGRDNVIYSNGKRIGLGKTLVFYRGRAPHGQKSNWIMHEYRLDDNTTNDANIVSNAMEDGAQEEGWVVCRIFKKNNHLKTLESPLTSSISDSIGGSSSHHHNHHHLLDDSCNEGALDQILQQMGRGGGGGCEEENNYDQPNNNYGGGYHNNNGSRFLKLPSLESPKSTSMDNNNNNNNNNNNNNKG 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241683g00003 235 MobiDBLite consensus disorder prediction 138 158 - -
Stsc241683g00003 235 MobiDBLite consensus disorder prediction 184 235 - -
Stsc241683g00003 235 Pfam No apical meristem (NAM) protein 29 91 IPR003441 GO:0003677|GO:0006355
Stsc241683g00003 235 SUPERFAMILY NAC domain 43 124 IPR036093 GO:0003677|GO:0006355
Stsc241683g00003 235 MobiDBLite consensus disorder prediction 170 235 - -
Stsc241683g00003 235 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 43 209 - -
Stsc241683g00003 235 Gene3D NAC domain 16 128 IPR036093 GO:0003677|GO:0006355
Stsc241683g00003 235 ProSiteProfiles NAC domain profile. 1 123 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241683g00003 Stsc-Chr241683 25484 27653 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241683g00003 44 232 NAC Transcription Factor Family AT2G46770 47.423 4.78e-50 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc241683g00003 NAM 1.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241683g00003 - - ahf:112734309 233.417