Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241682g00024 ATGCCGGGATTTCCAAGGCATATTGTTAAAGAAGGAAAGAAATGCAAGAGAGGAAGAGAAGGAAACTTGAACATCATGAAGAGAATTAGAATCATTTATAGTGATCCAGATGCAACAGATGATTCCAGCCAAGAAGATGACAGTTTTTTGAGGAATGACTATGAACAACATGGTCCTAAGCGAGTCAACAAAGAAATCTTGGTTCCATGCATGGCAACCAAATCACATGAAGTGGATGATGATGATGATTCTGTACAACAAGGTATCAGCATTGACAAGATCAAACCACGTCTTAAAGTTTTGCGAAGCCGTAGGAGCCGGAGATCATCCAGCAAGTACAAAGGTGTTCAAAGAAGGAAATGGGGGAAGTATGTGTCCGAAATCCGAGACCCCATTCGAGGCGTGCGAGTGTGGCTCGGTACTTTCAATACCGAGGAAGAGGCTGCAATGGCTTATGAGAAGAAGAGAATTGAATTTGAGAACTCATTGATGGATTTGGGGAAAATGGTTGGTGCATTGGAGTTGGAAGATGGCAATCAAGTGTTGTCTCAACAATCCCCAGCATCTGTGCTTGATGTCACAGCTACAAGAGCATCACTTGATACTGATAGCAATGGATCAGTTGAAGGTAAGGGCAATGTTGAAACCAGTGCTCTTGTAATGGAACCTGTTCATGTGGAAGATCATCAATCATTTCAGCATTTACTTGAGGAGTCAATTGTGCAATCACTGCTTAGGCATGAATTTGATAGTTTCTTGGTCAATGACAATGGTAGCTGTGCTATGTGGAATGTGAAAGATGGTGAAGGTAGCAGCACTCTTCCACATATTGAAACTGCTTTTGATGATTCAGAGTTGACTTGGATTGATGAGAATTTGTAA 882 0.4161 MPGFPRHIVKEGKKCKRGREGNLNIMKRIRIIYSDPDATDDSSQEDDSFLRNDYEQHGPKRVNKEILVPCMATKSHEVDDDDDSVQQGISIDKIKPRLKVLRSRRSRRSSSKYKGVQRRKWGKYVSEIRDPIRGVRVWLGTFNTEEEAAMAYEKKRIEFENSLMDLGKMVGALELEDGNQVLSQQSPASVLDVTATRASLDTDSNGSVEGKGNVETSALVMEPVHVEDHQSFQHLLEESIVQSLLRHEFDSFLVNDNGSCAMWNVKDGEGSSTLPHIETAFDDSELTWIDENL 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241682g00024 293 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 27 182 - -
Stsc241682g00024 293 PRINTS Ethylene responsive element binding protein signature 113 124 IPR001471 GO:0003700|GO:0006355
Stsc241682g00024 293 PRINTS Ethylene responsive element binding protein signature 135 151 IPR001471 GO:0003700|GO:0006355
Stsc241682g00024 293 Gene3D AP2/ERF domain 111 166 IPR036955 GO:0003700|GO:0006355
Stsc241682g00024 293 SUPERFAMILY DNA-binding domain 111 160 IPR016177 GO:0003677
Stsc241682g00024 293 CDD AP2 112 159 IPR001471 GO:0003700|GO:0006355
Stsc241682g00024 293 ProSiteProfiles AP2/ERF domain profile. 112 176 IPR001471 GO:0003700|GO:0006355
Stsc241682g00024 293 SMART rav1_2 112 166 IPR001471 GO:0003700|GO:0006355
Stsc241682g00024 293 Pfam AP2 domain 111 161 IPR001471 GO:0003700|GO:0006355
Stsc241682g00024 293 MobiDBLite consensus disorder prediction 36 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241682g00024 Stsc-Chr241682 219663 220544 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241682g00024 13 160 AP2-EREBP Transcription Factor Family AT1G68550 36.842 1.13e-20 88.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Stsc241682g00024 AP2 7.4e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241682g00024 - - aip:107642108 445.662