Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241682g00021 ATGAAGGGTTGTTCTTCAAGAGCATGTGATAGCTGCTTAAGAGTAAGAGCAAGGTGGTTTTGTGCTGCAGATGATGCTTTCCTCTGCCATGGCTGTGACAACTTTGTTCACTCTGCTAACCAGTTAGCGAGCCGCCATGAAAGGGTTAGGCTCCAAGCATCCTCATCCTCCAAGATGATGATAAGAACCATGGAAGAAGAAGCTGAAGGACAAGCTTGGTGCAGTGGCTTCACACGCAAGGCAAGAACCCCGCGCCATAACAACAAGAATTATTTGGTGCAGCAGCAGCAAGAAGAAGAAAAATTAGGAGGAAAAGATGATGAGGAAGAAGGGGTTTTCATCAACTACCATAGCTCCATGTTTCTTCCTGTTGTGCCTGAGATTGGATGTGAAGATCAGATGCTTCTTGATGATTATGAAACTGAGGATCAGATGCTTTGCCGCGTGCCGGTGTTTGACCCTTTTGATGATGATTCTGAGCTTTGTAGTGTTTACAATGAAGTGAAGAATAAGAAACAGAAGAATAAGAAGAAGAAGAATAACAATGATGCTGATGACTTAGAAGGTGCTGAGCTTCTTCCAACAGATCATGTGGATCTTGCTGAGTTTGCTGCGGATGTAGAAAACTTGCTTGATATTGAAGATAATAAAGGTGCAACAACAATGGTTAAGGTTAAGGATGAATTATTACAAGTTACTAATAACAATGATGATGATTGTAATTTGGAGTCAATTCTTGATTGGAATATTGACACAACAAAATCAATGATGATGGGAGTAGTAGAACATGAAGAGGAGGAGGAGGAGGAAAATAATAAGGTTCCAGTGATGGTGGCAAGTGGTGGTAATAAAGTGGAAATAATAAAGAAAGAGAGGCTTTTGAGGCTAAATTATGAAGAGGTTATTTCTGCTTGGGCAAGTCAAGGATCTCCATGGACTACACCAAATCCACCAGACTTCAACTTTGTTGATGATTGTTGGCCACATTACTGGGGTTCAAGTAGTGGTGGGGCAAGAAACATAAGATGGAATGAAGCAGGGGGAGTAGTTGATGATGGAGGAAGAGAAGCAAGAGTATCAAGGTACAGAGAAAAGAGAAGAACTCGTTTGTTTGCAAAGAAGATAAGATATGAAGTGAGGAAGCTCAATGCTGAGAAACGACCAAGAATGAAGGGTCGTTTTGTCAAGAGAACATCATCATCATCATCCTTTGTTGGAGGAGCCATTAGTAGTGCTGCTTCTTTTCCACCTCATCAATTCCCACTCACATCAAATTGA 1278 0.4131 MKGCSSRACDSCLRVRARWFCAADDAFLCHGCDNFVHSANQLASRHERVRLQASSSSKMMIRTMEEEAEGQAWCSGFTRKARTPRHNNKNYLVQQQQEEEKLGGKDDEEEGVFINYHSSMFLPVVPEIGCEDQMLLDDYETEDQMLCRVPVFDPFDDDSELCSVYNEVKNKKQKNKKKKNNNDADDLEGAELLPTDHVDLAEFAADVENLLDIEDNKGATTMVKVKDELLQVTNNNDDDCNLESILDWNIDTTKSMMMGVVEHEEEEEEENNKVPVMVASGGNKVEIIKKERLLRLNYEEVISAWASQGSPWTTPNPPDFNFVDDCWPHYWGSSSGGARNIRWNEAGGVVDDGGREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRTSSSSSFVGGAISSAASFPPHQFPLTSN 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241682g00021 425 Pfam CCT motif 355 397 IPR010402 GO:0005515
Stsc241682g00021 425 Coils Coil 170 190 - -
Stsc241682g00021 425 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 6 400 - -
Stsc241682g00021 425 ProSiteProfiles CCT domain profile. 355 397 IPR010402 GO:0005515
Stsc241682g00021 425 CDD Bbox1_BBX-like 8 51 - -
Stsc241682g00021 425 ProSiteProfiles Zinc finger B-box type profile. 4 51 IPR000315 GO:0008270
Stsc241682g00021 425 SMART bboxneu5 4 51 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241682g00021 Stsc-Chr241682 207602 210126 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241682g00021 3 399 C2C2-CO-like Transcription Factor Family AT1G68520 40.984 1.09e-82 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Stsc241682g00021 CCT 1.2e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241682g00021 - - aip:107644315 483.026