Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241682g00019 ATGCGACTAAGCTGCAACGGTTGTCGTGTCCTTCGCAAAGGTTGCAACCCTGAATGCCCCATTAAACCCTGCCTCCATTGGATCAAATCGCCGGAATCACAGTCCAACGCCACCCTCTTCCTCGCCAAGTTCTACGGCCGCGCTGGCCTCCTCAACCTCCTCACCGCCGGCGATCCCAAACTCCGCCCAGCAATTTTTAAATCTTTGCTATACGAAGCTTGTGGCCGGATAGTGAACCCGGTTTTCGGTTCGACCGGATTGTTATCGACCGGGAGCTGGCACTTGTGTGAAGCAGCTGTTGAAGCCGTTCTTAGCGGCGCGCCGATTCAGCAACACGCTGGTTTAGATGGCGCGGGCCAGCAGCTAAACCCGTCTGATATTCGCCACGTAACCAAGAGAGGGAAATCTTGCGGCTCAGATCATGTTCTTAAGCCCCGGAAGAGCCAGTTCAAGAGACGCGCTGAGAAGCCGAATCCGAAGCCGGAGGTGGAGCTGGATAACGGTGTAGCCGAGTTGGTGGTGGAGGCTTGCGTAATGAATGAGTTAGATGAATCGGCGAGTCCTGACTCAGGGTCTGGGGTGAGTGAGCACGTAAGTGTTGTCGTTGGTGGCAGCGCCGCAGAAGATGATAGCGGTTCAATTGAGAGTGTCAATCCGGCTCGAGCCGATGATGGGGAGAGTGAGCTGGAGCTGACCTTGGGGTTTCAGTGGCTTTGA 717 0.5551 MRLSCNGCRVLRKGCNPECPIKPCLHWIKSPESQSNATLFLAKFYGRAGLLNLLTAGDPKLRPAIFKSLLYEACGRIVNPVFGSTGLLSTGSWHLCEAAVEAVLSGAPIQQHAGLDGAGQQLNPSDIRHVTKRGKSCGSDHVLKPRKSQFKRRAEKPNPKPEVELDNGVAELVVEACVMNELDESASPDSGSGVSEHVSVVVGGSAAEDDSGSIESVNPARADDGESELELTLGFQWL 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241682g00019 238 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Stsc241682g00019 238 MobiDBLite consensus disorder prediction 133 163 - -
Stsc241682g00019 238 Pfam Lateral organ boundaries (LOB) domain 4 103 IPR004883 -
Stsc241682g00019 238 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 3 184 - -
Stsc241682g00019 238 MobiDBLite consensus disorder prediction 202 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241682g00019 Stsc-Chr241682 195126 196556 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241682g00019 1 236 AS2 family AT3G02550 46.694 1.16e-63 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Stsc241682g00019 LOB 8.8e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241682g00019 - - aip:110272137 277.715