Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241682g00008 ATGGAGGAGAATCTACCTCCTGGATTCAGATTCCATCCAACAGATGAAGAGCTTATAACATATTATCTAACAAGGAAAGTCTCTGAAAATGGATTCTCTTCTAAAGCTATTGCTGTTGTTGATCTCAACAAGTCTGAGCCTTGGGATCTTCCAGGTAAGGCAAGCATGGGTGAGAAGGAATGGTACTTCTTCAGCTTAAGAGATAGAAAATATCCAACAGGACTAAGAACAAATAGGGCCACAGAATCTGGGTATTGGAAGACCACTGGCAAAGACAAAGAGATTTTTCGTGGTGGTGGCGGCGGCGGCGGCGTTTTGGTTGGAATGAAGAAAACCCTAGTTTTCTATAAGGGTAGAGCTCCAAAGGGTGAGAAAACCAATTGGGTCATGCATGAATATAGGCTTCACAACAACCATCCCTTTAGACCTAAGGACGAATGGGTGGTGTGCAGGGTATTCCAAAAAAGCACAGCAGCTAAAAAACCGCCACAACAAACATCATCTTCCCAACCTGAATCACCATGTGAAGATGACACAACCTCAATCGTCAATGAATTTGGTGATGTTATTCAGCTTCCAAATCTAAACAACAACATTAACAATAACAATAATAATAATAATTCTTCATCATCTTCATCAAGTGCATTATTCCCTAATAATAACATTATTTCAGGACAAATTCATCCTCATGACCTAATAACCAATAATAATAATAATGTTAACACAAACATGAACTTAGCAATGAATTGGCCATCATCAAGTGATAATATTAATGTTCCATCAATTCCATGGCCTCCAGTAGGGTTCTTGAATCCAACTAGTATTTCATCAATGAATTCCTTGATCCTCAAGGCATTGCAGCTTAGGAATAATCATAATTATAATTTTATTCATCATCAACAACAAAGAGAAGCTGCACCCACATTTTCACCATCATCATATGTTATGCCCCATCATCATCATCAAGGAGTAGTAGTTCCCCAACATCAAGTTATTGGAACAAATAATAATAGTGATGACCTAATAACAAGTTCTTCAAATCTCAATGCTTCTTCTTCATCAAAAGTTTTGGAATGTATGCCACAACAACAACAACAGGAACAACCATTCAATTTGGACTCCCTTTGGTGA 1131 0.3793 MEENLPPGFRFHPTDEELITYYLTRKVSENGFSSKAIAVVDLNKSEPWDLPGKASMGEKEWYFFSLRDRKYPTGLRTNRATESGYWKTTGKDKEIFRGGGGGGGVLVGMKKTLVFYKGRAPKGEKTNWVMHEYRLHNNHPFRPKDEWVVCRVFQKSTAAKKPPQQTSSSQPESPCEDDTTSIVNEFGDVIQLPNLNNNINNNNNNNNSSSSSSSALFPNNNIISGQIHPHDLITNNNNNVNTNMNLAMNWPSSSDNINVPSIPWPPVGFLNPTSISSMNSLILKALQLRNNHNYNFIHHQQQREAAPTFSPSSYVMPHHHHQGVVVPQHQVIGTNNNSDDLITSSSNLNASSSSKVLECMPQQQQQEQPFNLDSLW 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241682g00008 376 Pfam No apical meristem (NAM) protein 6 135 IPR003441 GO:0003677|GO:0006355
Stsc241682g00008 376 ProSiteProfiles NAC domain profile. 5 155 IPR003441 GO:0003677|GO:0006355
Stsc241682g00008 376 MobiDBLite consensus disorder prediction 158 180 - -
Stsc241682g00008 376 FunFam NAC domain-containing protein 100-like 14 159 - -
Stsc241682g00008 376 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 247 - -
Stsc241682g00008 376 Gene3D NAC domain 14 160 IPR036093 GO:0003677|GO:0006355
Stsc241682g00008 376 MobiDBLite consensus disorder prediction 193 214 - -
Stsc241682g00008 376 SUPERFAMILY NAC domain 3 155 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241682g00008 Stsc-Chr241682 75394 77973 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241682g00008 1 376 NAC Transcription Factor Family AT3G18400 52.219 4.23e-115 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc241682g00008 NAM 1.6e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241682g00008 - - aip:107644305 508.064