Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241682g00001 ATGGGCTTCATCTCCATACTCTGCCCCTGCATGGACACCACTCGTCTCAGGGGACCTGCCGAATCCTCCCACCGCCCCCACGATCCCGGCGATGGTGACGCCGCTGATACCATCGACCTCTTCTTCGGCCTCCACACACTCCAGCTCGCCACCAATTTCTTCTCTGACCTCAACCAGCTTGGTCATGGAGGCTTTGGCCCTGTTTACAAGGGCTTGATGCCTAATGGTCAAGTAGTAGCTGTGAAGAAGCTTTCATTAGAATCAAGACAAGGAGTTAAAGAGTTTACCAACGAAGTCAAGCTGTTACTCAAAATTCAGCACAAAAACTTGGTTACTCTCCTTGGCTGCTGCATAGAAGGACCTGAAAAGATGCTTGTTTATGAGTATCTTCCCAACAAAAGCCTTGATCACTTTCTCTTTGATAAAACAAAGTCTTCATCTCTGGACTGGACAACACGGTTTAATATAGTTACAGGAGTGGCGAGAGGACTTCTTTACCTGCACGAGGAGGCCCCGGAAAGAATAATTCATAGAGACATCAAAGCTAGCAACATATTACTTGATGAGAGGTTAAATCCAAAAATTTCAGACTTCGGTTTGGCAAGGCTGTTTCCTGGAGATGATACTCATGTCCAGACATTCAGGATTTCCGGTACACATGGTTACATGGCTCCTGAATATGCAATGCGTGGATATCTATCGGTGAAGACAGATGTCTTCAGTTTTGGGATCTTGGTGCTGGAATTAATTAGTGGGAGGAAAAATCACGACGTGCAGTGCGGTGGAGAAAAGGCTGATCTCTTGAATTATGCATGGGTACTTTATCAGGAAGGAAAAATTATGGATTTAGTTGACCAAACTCTTGGCAAATACAACCCTGATGAGGCAGCAATGTGCATTCAGCTTGGTTTGTTGTGCTGTCAAGCAAGTATAGTAGATAGGCTTGACATGAATTCGGTTCATCTCATGCTATCGAGTGATTCTTTCACATTGCCAATACCAGGTAAACCCGGAATCCATGGCCGTGTCGGACGTTGGACCACGACCACCACCGCTGCATTTACCAATACTAATGCTAGTAGTGTAACCAAGGCTTCAGGTGGTAGTAGGGCTTCAGGATCTAGTAATTATCTGGAGGATTTTTCTAGGAATTCTATCTCCACTTCTTCATTTGATGAAGGCAGATGA 1188 0.4529 MGFISILCPCMDTTRLRGPAESSHRPHDPGDGDAADTIDLFFGLHTLQLATNFFSDLNQLGHGGFGPVYKGLMPNGQVVAVKKLSLESRQGVKEFTNEVKLLLKIQHKNLVTLLGCCIEGPEKMLVYEYLPNKSLDHFLFDKTKSSSLDWTTRFNIVTGVARGLLYLHEEAPERIIHRDIKASNILLDERLNPKISDFGLARLFPGDDTHVQTFRISGTHGYMAPEYAMRGYLSVKTDVFSFGILVLELISGRKNHDVQCGGEKADLLNYAWVLYQEGKIMDLVDQTLGKYNPDEAAMCIQLGLLCCQASIVDRLDMNSVHLMLSSDSFTLPIPGKPGIHGRVGRWTTTTTAAFTNTNASSVTKASGGSRASGSSNYLEDFSRNSISTSSFDEGR 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241682g00001 395 ProSiteProfiles Protein kinase domain profile. 54 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241682g00001 395 Pfam Protein tyrosine and serine/threonine kinase 58 255 IPR001245 GO:0004672|GO:0006468
Stsc241682g00001 395 ProSitePatterns Serine/Threonine protein kinases active-site signature. 175 187 IPR008271 GO:0004672|GO:0006468
Stsc241682g00001 395 SMART serkin_6 54 305 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241682g00001 395 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 39 358 - -
Stsc241682g00001 395 SUPERFAMILY Protein kinase-like (PK-like) 40 324 IPR011009 -
Stsc241682g00001 395 MobiDBLite consensus disorder prediction 361 380 - -
Stsc241682g00001 395 Gene3D Phosphorylase Kinase; domain 1 30 129 - -
Stsc241682g00001 395 FunFam Cysteine-rich receptor-like protein kinase 2 26 129 - -
Stsc241682g00001 395 Gene3D Transferase(Phosphotransferase) domain 1 130 330 - -
Stsc241682g00001 395 FunFam Cysteine-rich receptor-like protein kinase 41 130 330 - -
Stsc241682g00001 395 CDD STKc_IRAK 60 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241682g00001 Stsc-Chr241682 2757 5296 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241682g00001 37 339 Receptor kinase-like Gene Family AT4G11530 53.094 2.62e-109 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc241682g00001 PK_Tyr_Ser-Thr 1.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241682g00001 - - tpra:123884781 606.29