Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241681g00040 ATGTCTCACTTCGGAAGGTCAGGTCCCCCAGACATTAGCGATACATACTCCCTTCTCGTTCTCAACATCACATTCCGTACAACCGCCGACGACCTCTTCCCTCTCTTCCACAAGTACGGCGACGTCGTCGACATTTTCATCCCCAAGGACCGTCGCACTGGCGACTCCAGGGGCTTCGCATTTGTCCGCTACAAGTACGCCGACGAGGCTCAAAAGGCTGTCGAGCGCCTCGACGGCAGGGTCGTAGACGGCCGCGAAATCACCGTCCAGTTCGCCAAGTACGGTCCCAACGCCGAGCGCATCCACAAAGGCAGGATTGTCGAATCTGATCCCAGATCTAAGCGCAGCCGCAGTCCCCGGAGAAGGCATCGTGATGATGATTACAAAGAGAAGGATTATAGGAGGAGGAGTCGCAGCAGGAGTTACGATAGGTATGAGCGTGACAGGTACCGTGGCAGGGACAAGGATTATCGTCGCCGGAGCCGGAGTGCCAGTCCGGACAAGGGTCGTGGAAGGGGACGCTATGATGATGATGACCGCCCTATCCGTAGCAGGAGCAGAAGCCGGAGCCGGAGTGTAGAGAGCCCCCCTCGTGCTCGGGGTAGCCCAAGTCCTCGAAGGAGTCGATCCCCTAGGAAAAGTGCTTCCCCAAGGAAGAAGAGCCCTAGGGGTGAAAGCCCTGAGACTCGCAATGGACATTCTCCTACACCTGTCTCGCCACGTGGTCGACCTTATGCATCCCGTAGTCCATCGCCTCGAAAATCTGATGGTGATGCATGA 780 0.5718 MSHFGRSGPPDISDTYSLLVLNITFRTTADDLFPLFHKYGDVVDIFIPKDRRTGDSRGFAFVRYKYADEAQKAVERLDGRVVDGREITVQFAKYGPNAERIHKGRIVESDPRSKRSRSPRRRHRDDDYKEKDYRRRSRSRSYDRYERDRYRGRDKDYRRRSRSASPDKGRGRGRYDDDDRPIRSRSRSRSRSVESPPRARGSPSPRRSRSPRKSASPRKKSPRGESPETRNGHSPTPVSPRGRPYASRSPSPRKSDGDA 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241681g00040 259 SMART rrm1_1 17 90 IPR000504 GO:0003723
Stsc241681g00040 259 MobiDBLite consensus disorder prediction 102 259 - -
Stsc241681g00040 259 Gene3D - 4 105 IPR012677 -
Stsc241681g00040 259 MobiDBLite consensus disorder prediction 102 194 - -
Stsc241681g00040 259 FunFam Serine/arginine-rich splicing factor SC35 4 103 - -
Stsc241681g00040 259 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 88 IPR000504 GO:0003723
Stsc241681g00040 259 SMART rrm2_1 17 90 IPR003954 GO:0003676
Stsc241681g00040 259 CDD RRM_SRSF2_SRSF8 18 90 - -
Stsc241681g00040 259 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 94 IPR000504 GO:0003723
Stsc241681g00040 259 SUPERFAMILY RNA-binding domain, RBD 9 118 IPR035979 GO:0003676
Stsc241681g00040 259 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 14 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241681g00040 Stsc-Chr241681 182053 184778 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241681g00040 13 92 Eukaryotic Initiation Factors Gene Family AT3G11400 36.250 7.72e-11 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241681g00040 K12891 - gmx:100778928 259.61