Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241681g00029 ATGGCCACCACCGCTGCCACGACGCAGCAGCGGCAGCAACTTCTCAACCTAGAATCCCTGCCTCGGATAGACACCACAACTCTCTCACACTCGGAGCTCCATGCCCTCTCTCTCTCCGCCTTCGATCTCCACTCCACTTATCGCCACCTCGTCACTCCCAAAATCGATCCCTCTCTCTTCAACGAGAGCGCCGGATCTCGCCGCCAGACATACTCCCGTCCTCACCGCTCCGAGTCTTCTCCCACCGGCCGCCGCCGCCGTGTCGCCGGCCTCCTCCCCGCCGCGAAGCTCTCTTCTCTCCCCACCGATGACCTTGGAAATGCCGAGAACCGTGTGATAATCGATTATCTGAAACAGTTCATCAGGGAAGATCCTAAGTTCGAGCAAGTCGAGTTCGCTCCGCCTTCTTCCGCTTCCGCGCTGGCTGCCTATCACGGAGGTGGTGCTGGAGAGGGGAGAGCGGAGCTAGCAATGGTGAAATTCGGGGAGAGGAAGAGGAAGAGAGGGAGGAAGCCAAAGGTGAAGGTGAACTTGGGGGAATCCTACAGTGGAATGGAGATTGTGAACAAGAACGGAGTGGTGATCGATCTGATGGAGCTAGCGAAGGCGGAGGATCCTTTTGCGGAGGAGCTGAGGAGGCGGACGGAGGGTCTGCAGGGCGAGGAGGAGCTGTTAGGGTTTCTGAGGGATTTAGAGGGACAATGGGGAAGCAGGAGGAGGAAGAGGAGGATTGTAGACGCTGCCAATTTCGGTGACGCTTTGCCGCTTGGTTGGAAGCTTATTCTCGGGTTGAAGAGAAAGGATGGTCGCTCCTGGATCTATTGCCGCAGATACATAAGCCCTAGTGGACAGCAATTTGTGTCTTGTAGAGAAGTTGCTTCATATTTGCAGTCTCTTATTGGCCATAGTGATGCACCATTGCAAATCAGTCATAGGAGTGAGAATATGCCACAGGAACAAAGAGCAACCACTGAACAGTCTGCAGGTGTTTCCCATGAGGATCGACATGATTGGCAGATTGTTGTAGCTAACTCAGATGTACCTAGTTTTTCTGTTTCTAATGAACGTGGGATGGAATTGGCCTTGTTGGGTTTGGAAAATCTTGCAGATGTGGAAATACATGACCTATTTGAATGTCACAAATGCGACGTCACCTTTGACGACAAGGATTCATACTTGCAGCACTTATTGTCATTTCACCAGAGAACTACTAGGCGATATCGGATTGGACCTTCTGTTGGAGATGGAGTTATAATTAAAGATGGAAAGTTTGAGTGCCAGTTCTGTCATAAGGTGTTCACAGAAAGGCGTCGCTACAGTAGTCATGTGGGGATCCATGTTAGGAATAACGGGAGGCAGGCTGTAGATTTGTCAGGTCTGGAAAATGTTGAACGGACAGACAAGTCTCCTGTGAGGGAGGACGTGCCTTCAAGACGCTCCAGGATGGATGCCCTTATTGAAATTGCTCAAAGCTCTATCATGGAGGATTGTGACATGGAGCCTGCATTGGAAGTTGCTGCTGGCAGCTTGGATCAAGATATGAACTTTGTGTCTGAACAGCAAATGGAAGATAGCTTAAATGGCACAAATGAAGTTCAAGATTTAAATCAGCAGGATAGTCCACAGTTACACATGGATGTGGAAGAAGAGGAAACTGATGATGATAGCCAAGTTATTGATGCAAAGATGGTTACTTGTCTCGATCACACGGGTTTGTTACATATAAATGAACAAAATGGTACTCCATCTGTTGAGGGGTTTGATAATTCTGGGATTGATGTGGGAGGAGCTTCTCAAAGCCCTTTGCTTCATTTATCATGCAAGGACAAAATATCAGAGTCTGGGGAGAATGAAAATTTTTGTTGCTCCAATACCAAAGAAAAGTCTAAGTTTAATGAAGACAATAGTAATAAGAATGAATTGGGTATTGGTTTAGATGGTTGCAAAGATGTACCTGTTAGGACCGATGTTCAAGAGATGCTAATGCCGGATTCTGACAAAAATGTGATCGACTCTAGGGTTTCTAAATCTCCTGTATCCCAAATGCAATCGTTGGATTGCTCTCCTGCTTTCAGCTCTGATAAGGTAGGAAAACAATCTTGTACTGAAGATCATGAACATAATAATGTGAAGAGGTTCCAGGAAATGGATGAAGTAAGTACTAAGCATGACGTTACAAGTGTTCAAGATTCCCTTTCACTGCCTGATGTGCAAACTGATATGGTAAACAAAACGGTGATGGAAGGAACATATCCCACTCGAGTTCAGGTTGAATCACAAGAAGTTATGCAGCTTACAACTGCGTGTGTTTGGTGTGGAATAGAGTTCAACCATGACGCTGTTAATTCTGAAATACAACCTGATTCTGTTGGATTCATGTGTCCAGCTTGTAAGGCGAAAATCTCTGGTCAAATTAATGTGTTGGACAGTTAA 2433 0.4686 MATTAATTQQRQQLLNLESLPRIDTTTLSHSELHALSLSAFDLHSTYRHLVTPKIDPSLFNESAGSRRQTYSRPHRSESSPTGRRRRVAGLLPAAKLSSLPTDDLGNAENRVIIDYLKQFIREDPKFEQVEFAPPSSASALAAYHGGGAGEGRAELAMVKFGERKRKRGRKPKVKVNLGESYSGMEIVNKNGVVIDLMELAKAEDPFAEELRRRTEGLQGEEELLGFLRDLEGQWGSRRRKRRIVDAANFGDALPLGWKLILGLKRKDGRSWIYCRRYISPSGQQFVSCREVASYLQSLIGHSDAPLQISHRSENMPQEQRATTEQSAGVSHEDRHDWQIVVANSDVPSFSVSNERGMELALLGLENLADVEIHDLFECHKCDVTFDDKDSYLQHLLSFHQRTTRRYRIGPSVGDGVIIKDGKFECQFCHKVFTERRRYSSHVGIHVRNNGRQAVDLSGLENVERTDKSPVREDVPSRRSRMDALIEIAQSSIMEDCDMEPALEVAAGSLDQDMNFVSEQQMEDSLNGTNEVQDLNQQDSPQLHMDVEEEETDDDSQVIDAKMVTCLDHTGLLHINEQNGTPSVEGFDNSGIDVGGASQSPLLHLSCKDKISESGENENFCCSNTKEKSKFNEDNSNKNELGIGLDGCKDVPVRTDVQEMLMPDSDKNVIDSRVSKSPVSQMQSLDCSPAFSSDKVGKQSCTEDHEHNNVKRFQEMDEVSTKHDVTSVQDSLSLPDVQTDMVNKTVMEGTYPTRVQVESQEVMQLTTACVWCGIEFNHDAVNSEIQPDSVGFMCPACKAKISGQINVLDS 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241681g00029 810 MobiDBLite consensus disorder prediction 58 87 - -
Stsc241681g00029 810 ProSitePatterns Zinc finger C2H2 type domain signature. 426 446 IPR013087 -
Stsc241681g00029 810 ProSitePatterns Zinc finger C2H2 type domain signature. 379 400 IPR013087 -
Stsc241681g00029 810 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 244 316 IPR001739 GO:0003677
Stsc241681g00029 810 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 8 1 636 IPR037472 -
Stsc241681g00029 810 SMART c2h2final6 377 400 IPR013087 -
Stsc241681g00029 810 SMART c2h2final6 424 446 IPR013087 -
Stsc241681g00029 810 MobiDBLite consensus disorder prediction 69 83 - -
Stsc241681g00029 810 ProSiteProfiles Zinc finger C2H2 type domain profile. 424 451 IPR013087 -
Stsc241681g00029 810 Gene3D Classic Zinc Finger 367 449 - -
Stsc241681g00029 810 Gene3D - 232 337 - -
Stsc241681g00029 810 SUPERFAMILY DNA-binding domain 252 303 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241681g00029 Stsc-Chr241681 133312 136957 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc241681g00029 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241681g00029 - - adu:107468625 1355.89