Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241681g00023 ATGGAAAACGACGACGTCGACATGAACGCCGAAGATAACAACGAAGCTGATCTTGATGACATGAAGAAGCGCTTGAAGGATATGGAAGATGAAGCTGCTGCTCTTAAAGAGATGCAGGCCAAGGTCGAGAAGGAGATGGGATCTGCTGCTCAAGATCCTGCAGCTGCTTCTGCTAGTCAGGTCAACAGAGAGGAGATAGATTCTCGTTCAGTCTTTGTTGGCAATGTGGACTATTCATGCACTCCTGAAGAAGTGCAGCAGCATTTTGAATCATGTGGAACTGTAAACAGAGTCACCATCCGGACTGATAAGTTTGGCCAACCCAAGGGTTATGCATATGTAGAGTTCATTGAAGCAGAGGCTGTTCAAGAGGCCCTTTTGCTGAATGAATCTGAATTGCATGGGCGTCAATTAAAGGTAACAGCTAAGAGGACCAACATCCCCGGAATGAAGCAATTCCGTGGCCGCCGACCTAATCCACACATGGGATTTAGAGGCNNNNNNNNNNTTGGATATGGGTATATGACTTAG 531 0.4576 MENDDVDMNAEDNNEADLDDMKKRLKDMEDEAAALKEMQAKVEKEMGSAAQDPAAASASQVNREEIDSRSVFVGNVDYSCTPEEVQQHFESCGTVNRVTIRTDKFGQPKGYAYVEFIEAEAVQEALLLNESELHGRQLKVTAKRTNIPGMKQFRGRRPNPHMGFRGXXXXGYGYMT 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241681g00023 176 SMART rrm1_1 70 141 IPR000504 GO:0003723
Stsc241681g00023 176 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 71 139 IPR000504 GO:0003723
Stsc241681g00023 176 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 69 145 IPR000504 GO:0003723
Stsc241681g00023 176 SUPERFAMILY RNA-binding domain, RBD 57 171 IPR035979 GO:0003676
Stsc241681g00023 176 Gene3D - 5 142 IPR012677 -
Stsc241681g00023 176 MobiDBLite consensus disorder prediction 15 43 - -
Stsc241681g00023 176 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 11 154 - -
Stsc241681g00023 176 CDD RRM_II_PABPs 70 141 - -
Stsc241681g00023 176 MobiDBLite consensus disorder prediction 1 62 - -
Stsc241681g00023 176 Coils Coil 11 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241681g00023 Stsc-Chr241681 104994 108567 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241681g00023 70 140 Eukaryotic Initiation Factors Gene Family AT2G36660 31.944 3.80e-08 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241681g00023 K14396 - mnt:21400190 263.462