Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241681g00014 ATGGTGCTTCACCATGGCAGAAAACTCATGCCAGAAATCTGCGAATCCATCTGCCACGTGGACCAGAACTGTTCTTCCTCAGACTGTGATGGCTGCCTCAAGCTCTGCCTCACCAACCCCCAATACTACTACTATTATTCCCAACCACCGCCACCTATTCCTCCTCTCCCTCTAGACGACACCTCAAGCAATGGAACCTCCCACGCGCTCTCGCCGTACCTCGTCCTCGCTCTCTCCGTTCTCGGAGCTGCTTTCTTCGTCGTTATCTGCTGCGCAATCTTCGCCACTCTCTTCCGAAGGAGGAGAAGATCAAGATCGTCATCGCTGCTACTTCGAACACAGAATACGCGTGACGACGATTTCTTCGTCGATGAGGAGCACGGTCCTATGGTGGACCACCCGATCTGGTACATCCGTACACCCGGTCTTCAAGAATCGATCATCAACGCAATCGCTGTTTGTAGGTATAAGAGAGGTGAGGGTTTGATCGAAGGAACAGAGTGCTCTGTTTGTTTGAGCGAGTTTCAAGAAGACGAGAGTGTTAGGCTTTTGCCGAAGTGTAACCACGCTTTTCATTTGCCTTGTATTGATACATGGCTTAGGTCTCACACCAATTGCCCCATGTGTAGAGCTCCAATTGTTTCCAATAACACTGTTAGGGTTCCTTCTATGCATCATCATAATCATAATCTTAATGTTCTTGATCCAATTTCAAGTTCTAGCTCAAGTTCAAGTTCAAGTTCCTTGGAGATGGGACCTCTGGAAAATATTAACAATGGAACAATTACAGGAATGGAAAATACTCAAAATAGTGGTTTTGAATTGAGGAATAGGGAAGAGCATGATGATGATGATGATGATGAAAGAGTAATAAGCATGATTAGGCCAAGAAGGTCTGTTTCTCTGGATTCATCTTCTGTTGCAGATATTGCACTTGCTGCAGCTGCATCTGCTCTGTCGACCGATTCGGATTCGAATAGAGTTGTTGGGGATGAGAATGAGAGTGAAGGAATTGGTTCAAAGAGGGTTAATGGAAATGAGAATGAGAATGTGGCAAGTAGTTCAAAAGGGAGAGGAGGGAGAGGGACAGGGAGAGAGAGAGGGAGAAGCTCTTCATTCAGGATAAGGTATCTGCATAGTGTTGTTCCTAGTTCAATGAAGAGGTCACGTTCCTACAATGGTAAATCCATTGTGTCTTCTTTGTATAGCCGCGGCCACACAAACAAGAAGCAAAATGCTACTAATAATATCAGAAGCTTTTAG 1263 0.4545 MVLHHGRKLMPEICESICHVDQNCSSSDCDGCLKLCLTNPQYYYYYSQPPPPIPPLPLDDTSSNGTSHALSPYLVLALSVLGAAFFVVICCAIFATLFRRRRRSRSSSLLLRTQNTRDDDFFVDEEHGPMVDHPIWYIRTPGLQESIINAIAVCRYKRGEGLIEGTECSVCLSEFQEDESVRLLPKCNHAFHLPCIDTWLRSHTNCPMCRAPIVSNNTVRVPSMHHHNHNLNVLDPISSSSSSSSSSSLEMGPLENINNGTITGMENTQNSGFELRNREEHDDDDDDERVISMIRPRRSVSLDSSSVADIALAAAASALSTDSDSNRVVGDENESEGIGSKRVNGNENENVASSSKGRGGRGTGRERGRSSSFRIRYLHSVVPSSMKRSRSYNGKSIVSSLYSRGHTNKKQNATNNIRSF 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241681g00014 420 SUPERFAMILY RING/U-box 162 216 - -
Stsc241681g00014 420 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 60 232 IPR044675 -
Stsc241681g00014 420 MobiDBLite consensus disorder prediction 232 268 - -
Stsc241681g00014 420 Pfam Ring finger domain 167 210 IPR001841 -
Stsc241681g00014 420 CDD RING-H2_EL5-like 167 210 - -
Stsc241681g00014 420 MobiDBLite consensus disorder prediction 319 372 - -
Stsc241681g00014 420 SMART FANCL_C_2 164 217 - -
Stsc241681g00014 420 SMART ring_2 168 209 IPR001841 -
Stsc241681g00014 420 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 143 219 IPR013083 -
Stsc241681g00014 420 ProSiteProfiles Zinc finger RING-type profile. 168 210 IPR001841 -
Stsc241681g00014 420 FunFam RING-H2 finger protein ATL54 143 216 - -
Stsc241681g00014 420 MobiDBLite consensus disorder prediction 339 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241681g00014 Stsc-Chr241681 57336 58598 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241681g00014 1 214 C3H Transcription Factor Family AT1G72220 42.672 7.87e-47 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241681g00014 - - adu:107468728 553.518