Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241681g00002 ATGACGAAACATAAAATAGAAATAAAGAAAATAGAGAACATGGCAGCAAGGCAGGTGGCTTTTTCAAAGAGGAGGAGAAGTCTGTTCAAGAAGGCTGAGGAGCTTTCAACTCTGTGTGATGCAGAGGTAGCGCTCCTTGTCTTTTCTGCTACTGGCAAACTCTTCCAACACTCCAGCTCAAGTGTAGAACAAGTAATAGAAATACACAAAAATATGCATTCAAGCATTGATAAATCATCATATCACCCTACAATGGAATTCCAGATGCGCAATGAAATAGCTGATAAGACTGGGGAACTAAGAAAGTTAAATGGGGAGGAGCTCCAAGAATTAAAATTTCAAGAATTAATGAAACTTGAGGAACGTCTGCTCAAAGGTCTAACCCGTGTTTTAAAAGCAAAGGATGAAAGAATGGCAAATGATATCACTGGCCTCAAAAGAAAGGAAGAGGACCTTATGCGTGAGAATAGGAGATTGTTACAGATTGCTGATGAACAAGGACATGCATGCAAGTTGGGGTAG 522 0.3985 MTKHKIEIKKIENMAARQVAFSKRRRSLFKKAEELSTLCDAEVALLVFSATGKLFQHSSSSVEQVIEIHKNMHSSIDKSSYHPTMEFQMRNEIADKTGELRKLNGEELQELKFQELMKLEERLLKGLTRVLKAKDERMANDITGLKRKEEDLMRENRRLLQIADEQGHACKLG 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241681g00002 173 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 56 IPR002100 GO:0003677|GO:0046983
Stsc241681g00002 173 Coils Coil 145 165 - -
Stsc241681g00002 173 CDD MADS_MEF2_like 5 75 IPR033896 GO:0000977|GO:0045944
Stsc241681g00002 173 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Stsc241681g00002 173 Pfam K-box region 88 161 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc241681g00002 173 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Stsc241681g00002 173 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Stsc241681g00002 173 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Stsc241681g00002 173 ProSiteProfiles K-box domain profile. 79 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc241681g00002 173 PANTHER SERUM RESPONSE FACTOR HOMOLOG 4 143 - -
Stsc241681g00002 173 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Stsc241681g00002 173 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Stsc241681g00002 173 SUPERFAMILY SRF-like 3 86 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241681g00002 Stsc-Chr241681 6063 11774 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241681g00002 1 161 MADS-box Gene Family AT2G22540 50.588 3.47e-48 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Stsc241681g00002 K-box 1.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241681g00002 - - ahf:112784740 287.73