Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241680g00012 ATGGCTGGTCCAACAACACCTACTTCTGCAGCTGGACAGGCATTACGTGTGGCGGCACCGCCGGCAACCGCGTCACCGCTATCCAACTCAGTAGACAGTCACTCACCGGAATACTACCCTCCAATCTCAACTCCCTCTCATAACAATTTAACAGGGCCTGTGCCTTCACTCGCCAACCTCCAGTTACTCCAGAATGTCAACCTGGAATTTAACAACTTCACCTCCGTCCCTGACGGCTGCTTTCATGGTCTATTCAGTTTGCAAGTCATCTCCATGAGCAGCAACTTCAACCTCGCGCCATGGACCTTCCTCACTAGTTTGGTTATGATTGATCACCAACACAGTAGTGTTCTAGACTCCATCTACTTTGACTTCACAAACATGGAGGGTAACTTGCCGGATATATTCCACTCCTTTCCCAGACTCCGTTATCTTGTTCTCCATGGCAACAACCTCACAGGGGTTCTTCCCAAATCTTTGGGGCAAACTTTAATTGCATACCTATCTCTTTCTAACCAGAAAGTAGGGTTTTCAGGCTCAATACATGTACTTTCCACCATGATCTACTTGCGAACCGTGGAACTTCAAAATAACAAGTTCACCGGTTCCATTCCTGACTTGTCAAATTCCCACTATTTGAATGGACTCAGGCTCGATAACAACTTCTTAACCGGTGTGGTTCCACCTTTTCTTGCGAGTCTTGAAAACTTGGAAATCCTTCTTTTGAATAACAACATGCTTAGGGGTCCAATACCTAACTTTGTCAGCCATTTCAAAGTCATCGGTTTATATCCAATCAATAGGTTGTGTCCAGTGTCTGACGGACTTTGTGATCAGATGATTTTGCTTGACATTGCAGAAGCCTATGGGAATCCAGTTCAGTTGACTGATTCATGGAAATGGGACAACCCTAATTGCCAAAACTGGAGCTCCATTTTATGCCGACTAGATGGGAAGGTGGTTGTTGTGGATATGGCAAGGCAAGGCTTAACAGGGACGATCTTGCCTGAGTTTGCTAATTTAACTGATTTGAAGGCTTTGAATTTGAGTGGAAATAATTTGACAGGTTCAATACCAGCAAGCTTGGTAACTTTGTCTCAACTTGAGACTCTGGATTTGTCTTATAACGATCTATCTGGAGAGGTCCCCATCTTTCCAACAAGAGTCAAGTTGAATATCACTGGTAATCCTTTCCTATACTTCCAACGACATCCAACATTCCCATTTGTTTGGGTTGCAGGTGCATTGGCAATAACAATCGTTGGTTTTCTAATGTTCATGGTGATTGTTTATAATCGAAAACGATGTGCTAGTTTGGTTACAAAAGGATTGTTCAAGAAAGCAAGAACGTATTCAGATGACAATGTTGAGAATTTCATGAAAAGATATAGTTCTTTGGTGCCAAAGCTCTACAGTTATAAAGAAATTAAAAAAATGACAAAGTCATTCCACCATAAAATAGGTCAGGGAGGATTCGGCATTGTCTACAAAGGATGCTTAGATGATGGTCGTCATGTGGCGGTAAAAGTAATAAGTGAATCAAAGGGAAGTGGAGAAGAATTTATGAACGAAGTCATTAGTATCAGTAGAACATCCCATGTCAATATAGTTTCACTTTTGGGATTTTGTTACGAGAAAAACAAAAGGGCACTTATATATGAATTTATGTTGAATGGTTCATTAGACAAGTTCATCCATCGAAAAGGATCTCCAAATACTAATTGCGATCTTGATTTGAACATATTATACAAAATCGCAATTGGTATTGCTCAAGGATTAGAATACTTACATAGAGGATGTAGCACGAGAATTGTTCATCTTGATATTAAACCTCAGAATATTCTTCTGGATGAATATTTTTGTTCAAAAATTTCTGATTTTGGATTAGCTATATTATGCAAAAGAAGAGAGAGTATAATATCTTTATTAGGGGCCAGAGGAACTATTGGATATATTGCTCCAGAAATTTTAACTCGAAGATATGGTGGAGTTTCTCACAAATCTGATGTTTACAGTTATGGTATGTTGATTCTTGAAATAATTGGAGGAAAAAATCATGAATATAGAAAATCACAGGCAAGTGAAATCTTTCTTCCAGAAATAATTTATGAAAATCTTGTACAAGATAACATTCGTTCAAGTCATTCTCCAATCATTGAAGAAGAAGCTGGGATATTAAAGAAGATGATCATGATAAGTCTTTGGTGCATACAAACGATCCCAACAAACCGGCCATGTATTAATAAAGTGATAGAGATGCTAGAAGGGCCACTAGAATTAGTGCCGTTTCCTCCAAAGCCCACCTCGTATTCTCCTAACATTGTTGCACCCTTACAATTTTTAGAAGTATCTTTTAAGAAAGTCAATTCCAACGCATCTTATTATCTCTTATGTTTGTATTAG 2403 0.3916 MAGPTTPTSAAGQALRVAAPPATASPLSNSVDSHSPEYYPPISTPSHNNLTGPVPSLANLQLLQNVNLEFNNFTSVPDGCFHGLFSLQVISMSSNFNLAPWTFLTSLVMIDHQHSSVLDSIYFDFTNMEGNLPDIFHSFPRLRYLVLHGNNLTGVLPKSLGQTLIAYLSLSNQKVGFSGSIHVLSTMIYLRTVELQNNKFTGSIPDLSNSHYLNGLRLDNNFLTGVVPPFLASLENLEILLLNNNMLRGPIPNFVSHFKVIGLYPINRLCPVSDGLCDQMILLDIAEAYGNPVQLTDSWKWDNPNCQNWSSILCRLDGKVVVVDMARQGLTGTILPEFANLTDLKALNLSGNNLTGSIPASLVTLSQLETLDLSYNDLSGEVPIFPTRVKLNITGNPFLYFQRHPTFPFVWVAGALAITIVGFLMFMVIVYNRKRCASLVTKGLFKKARTYSDDNVENFMKRYSSLVPKLYSYKEIKKMTKSFHHKIGQGGFGIVYKGCLDDGRHVAVKVISESKGSGEEFMNEVISISRTSHVNIVSLLGFCYEKNKRALIYEFMLNGSLDKFIHRKGSPNTNCDLDLNILYKIAIGIAQGLEYLHRGCSTRIVHLDIKPQNILLDEYFCSKISDFGLAILCKRRESIISLLGARGTIGYIAPEILTRRYGGVSHKSDVYSYGMLILEIIGGKNHEYRKSQASEIFLPEIIYENLVQDNIRSSHSPIIEEEAGILKKMIMISLWCIQTIPTNRPCINKVIEMLEGPLELVPFPPKPTSYSPNIVAPLQFLEVSFKKVNSNASYYLLCLY 800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241680g00012 800 SUPERFAMILY L domain-like 46 402 - -
Stsc241680g00012 800 Pfam Protein kinase domain 484 751 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241680g00012 800 MobiDBLite consensus disorder prediction 23 45 - -
Stsc241680g00012 800 Pfam Leucine rich repeat 338 378 IPR001611 GO:0005515
Stsc241680g00012 800 SUPERFAMILY Protein kinase-like (PK-like) 457 754 IPR011009 -
Stsc241680g00012 800 SMART LRR_typ_2 139 162 IPR003591 -
Stsc241680g00012 800 SMART LRR_typ_2 60 83 IPR003591 -
Stsc241680g00012 800 SMART LRR_typ_2 234 258 IPR003591 -
Stsc241680g00012 800 SMART LRR_typ_2 341 365 IPR003591 -
Stsc241680g00012 800 ProSitePatterns Protein kinases ATP-binding region signature. 487 509 IPR017441 GO:0005524
Stsc241680g00012 800 PANTHER OSJNBA0070M12.3 PROTEIN 47 756 - -
Stsc241680g00012 800 Gene3D Transferase(Phosphotransferase) domain 1 556 760 - -
Stsc241680g00012 800 Gene3D Ribonuclease Inhibitor 44 270 IPR032675 -
Stsc241680g00012 800 FunFam Leucine-rich repeat receptor-like kinase 278 402 - -
Stsc241680g00012 800 ProSiteProfiles Protein kinase domain profile. 481 764 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241680g00012 800 FunFam PR5-like receptor kinase 556 764 - -
Stsc241680g00012 800 PRINTS Leucine-rich repeat signature 365 378 - -
Stsc241680g00012 800 PRINTS Leucine-rich repeat signature 344 357 - -
Stsc241680g00012 800 ProSitePatterns Serine/Threonine protein kinases active-site signature. 604 616 IPR008271 GO:0004672|GO:0006468
Stsc241680g00012 800 FunFam Suppressor of npr1-1 constitutive 4 451 555 - -
Stsc241680g00012 800 SMART serkin_6 481 754 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241680g00012 800 Gene3D Phosphorylase Kinase; domain 1 454 555 - -
Stsc241680g00012 800 MobiDBLite consensus disorder prediction 1 45 - -
Stsc241680g00012 800 Gene3D Ribonuclease Inhibitor 277 402 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241680g00012 Stsc-Chr241680 72842 75541 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241680g00012 451 777 Receptor kinase-like Gene Family AT5G38280 56.928 2.09e-118 371
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc241680g00012 Pkinase 7.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241680g00012 - K00924 aip:107635702 686.411