Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241680g00011 ATGCCGCAATTGTATGATGTGAACCTTGAAGGGAACTCCTTCGAAGGTTCCATTCCGGACTTATCCAGTTGCACCAACTTGCGATTTCTAATGCTTGCAAACAATCGGTTAACAGGTGTAGTTCCAGTTTCTCTGGTCCAGAACGACAAACAAATATGGCAAGTTTCATTGGAAAACAACTGGTTCCAGGGTCCTCTTCCTTTATTTAATAAGACTCAAACTCCTTTGGTAAGTCTTGATGGTAATGGATTCTGTTTAAACCATTCTGGGCCATGTGACCACAGAGTCACCACTTTGCTTCAAGTTGCTGACAAATTTGGTTATCCATTTCTGTTGGCGAAATCATGGCGAGGAAACAATCCCTGTCAAGGTTGGGATTTCATCATGTGTGATAACAATGGCAACATCAGAACCGTGAATTTGACAAATTTGAATTTGATGGGGACCATATCTCCTGCATTTCAGAGTTTAAGGGATCTGTATGAAGTGTATCTTGGTGGGAATAAATTGAGTGGTTCCATACCAGAGAGATTGACAACTCTGCAGCACCTCAAGATTCTTGATGTCTCCAATAACAACCTGTCTGGAAACATTCCACCATTCTCAAATAAAGTGAACCTCATTACAGCAGGTAATGCTTTGCTCAGGCAGCCTCACTTTCAAGCAAACATTCCATCTAACGCCCCGCTCTCTCCTGCTTCGATTGTAGATTGGAGCACACTCTACCAAATCACGATTAGCATTGCTCGAGGGTTAGATTACTTACATCGTGGATGCAATACAAGAATTTTGCATCTTGATATCAAACCACAAAATATACTTTTGGATGAAAACTTTTCTCCAAAAATTGCAAATTTTGGATTAGCTAAAATATGCAAAAAGGACGAAAGTATTGTGTCTATATTGGGGACAAGAGGAACTCCGGGTTATATTGCCCCAGAAATGTTTAGTCGAATGTATGGTAGAATTTCTCACAAGTCAGATGTGTATAGTTATGAAATGTTAACTCTTGACATGATTGGAAGAAGAAAGAATTATGATACCGGAGAATCTCGCAGTGATGAACTGTACTTTCCGGATTGGATTTATAAAGAACTTGTAGAAGGTAATATTTGTACAAAGAGTATGCCAAACACAGAAGAAGAAAATGGTATAATAACGAAGATGACACTGGTGGGCTTATGGCGTATTCAAATAAATGCATCAAATAGACCATCCATGAGTAAAGTGGTAGAAATGTTAGAAGGACCACTTCAATCAATACCATATCCTCCGAAGCCTGTGGTGTCTTCTCCTACAAGACCTCCCTTGCAATTTTCAGGTGCATCTCATAGAAAACTATATGAGACAAATTCAACTGAAGAAGTGAATGGTTCAATAAAATAG 1386 0.3925 MPQLYDVNLEGNSFEGSIPDLSSCTNLRFLMLANNRLTGVVPVSLVQNDKQIWQVSLENNWFQGPLPLFNKTQTPLVSLDGNGFCLNHSGPCDHRVTTLLQVADKFGYPFLLAKSWRGNNPCQGWDFIMCDNNGNIRTVNLTNLNLMGTISPAFQSLRDLYEVYLGGNKLSGSIPERLTTLQHLKILDVSNNNLSGNIPPFSNKVNLITAGNALLRQPHFQANIPSNAPLSPASIVDWSTLYQITISIARGLDYLHRGCNTRILHLDIKPQNILLDENFSPKIANFGLAKICKKDESIVSILGTRGTPGYIAPEMFSRMYGRISHKSDVYSYEMLTLDMIGRRKNYDTGESRSDELYFPDWIYKELVEGNICTKSMPNTEEENGIITKMTLVGLWRIQINASNRPSMSKVVEMLEGPLQSIPYPPKPVVSSPTRPPLQFSGASHRKLYETNSTEEVNGSIK 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241680g00011 461 ProSitePatterns Serine/Threonine protein kinases active-site signature. 263 275 IPR008271 GO:0004672|GO:0006468
Stsc241680g00011 461 Gene3D Ribonuclease Inhibitor 1 92 IPR032675 -
Stsc241680g00011 461 SUPERFAMILY Protein kinase-like (PK-like) 236 414 IPR011009 -
Stsc241680g00011 461 SUPERFAMILY RNI-like 2 200 - -
Stsc241680g00011 461 MobiDBLite consensus disorder prediction 425 461 - -
Stsc241680g00011 461 PANTHER OSJNBA0070M12.3 PROTEIN 1 219 - -
Stsc241680g00011 461 SMART serkin_6 154 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241680g00011 461 MobiDBLite consensus disorder prediction 433 461 - -
Stsc241680g00011 461 ProSiteProfiles Protein kinase domain profile. 139 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241680g00011 461 Gene3D Ribonuclease Inhibitor 93 218 IPR032675 -
Stsc241680g00011 461 FunFam Leucine-rich repeat receptor-like kinase 94 218 - -
Stsc241680g00011 461 FunFam PR5-like receptor kinase 227 424 - -
Stsc241680g00011 461 Pfam Protein kinase domain 239 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241680g00011 461 Gene3D Transferase(Phosphotransferase) domain 1 227 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241680g00011 Stsc-Chr241680 69050 71100 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241680g00011 236 445 Receptor kinase-like Gene Family AT5G38260 55.399 6.88e-72 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc241680g00011 Pkinase 6.1e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241680g00011 - - aprc:113862598 319.701