Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241680g00008 ATGAATTTGGCTGGGAATAAATTGAAGGGTTCCATACCAGAGAGCTTGACAACTCTGCAGCACCTCAAGATTCTTGATGTCTCCAATAACAATCTATCAGGAAACATTCCACCATTCTCAGATAAAATCAAGCTCATTACAGCAGGTAATGCTTTTCTTGGGAAGTCTCAAACTCAACCAACCGTTTCTGATAACAGGCCAAGTGCGCCTGCACCTAAAACCTTGTTCTCTTCTGCTTCGATTGTAGGTATATCAATAGCTGGTGTTGGAGTTATTGTAATCTTTGTTGTGGCGATTGCTTATAATCATAAGAAGCGTTTCAATTTAGTACAATGGATAACACTGAAGAAAGAAACATCTCTTGATCACCAAGTAGAGGAGCTAATAAAAAGTTATGGTACTTCAACTCCAATGAGATATACTTATGCAGAAGTAAAACAAATGACGAATTCATTTCAGGTAAAATTAGGACAAGGAGGATATGGCATTGTGTACAAAGCAAGTTTAAATGATGGTCGTCAAGTGGCAGTAAAAGTACTTAAGGAGTCAAAAGGAAGTGTAGAAGAATTTGTAAACGAGGTTGTTATTATTAGCAGAACATCTCATGTGAACATTGTTTCACTTTTGGGATTTTGCTACGAAATGAACAAACAAGCTCTCATTTATGAATTCATGCCTAATGGCTCCTTGGATAAATTTCTATATAAAGAACGATCTTCCCATCTCAATTGTAATTTAGATTGGGGCACAACTTACGCAATAGCAATTAGCATAGCTCGGGGATTAGAATACTTACATCGAGGATGTAATACTAGGATTTTGCATCTTGATATCAAACCCCAAAACATTCTTCTGGATGAAAACTTTTGTCCCAAAATTGCTTATTTTGGACTAGCCAAAATATGCAAAATGGATGAAAGTATTGTGTCTATACTGGGCACAAGAGGGACTCCGGGTTATATTGCACCAGAAATGTTTAACCAAATATATAGCGGGGTTTCTCATAAATCTAATGTTTATAGTTATGGGATGTTAATTCTTGAAATGATTGGAAGAAGAAAGAATTATGAAACTGGAGGATCTCATAGCAGTGAATTGTACTTCCCAGATTGGATCTATAAAGATCTCGATGCAGGTAATATTGATGCAAGGAGTTTGGCAAACACAGAAGAAGAAAATTGTATAATAATGAAGATTGCACTGGTGAGCCTTTGGTGTATTCAAATAAATCCATCAAGTAGACCATCAATGAGTAAAGTAGTAGAAATGTTAGATGGATCGCTTCAATCAATACCATATCCTCCGAAGCCTGTGATGTCTTCTCCTACAAGAGTTCCCTTACAATATTCAGATGCATCTTACAGTTACAGCAGTGAAAGATTAACCAACTCAAGAAGTGAATGA 1404 0.3647 MNLAGNKLKGSIPESLTTLQHLKILDVSNNNLSGNIPPFSDKIKLITAGNAFLGKSQTQPTVSDNRPSAPAPKTLFSSASIVGISIAGVGVIVIFVVAIAYNHKKRFNLVQWITLKKETSLDHQVEELIKSYGTSTPMRYTYAEVKQMTNSFQVKLGQGGYGIVYKASLNDGRQVAVKVLKESKGSVEEFVNEVVIISRTSHVNIVSLLGFCYEMNKQALIYEFMPNGSLDKFLYKERSSHLNCNLDWGTTYAIAISIARGLEYLHRGCNTRILHLDIKPQNILLDENFCPKIAYFGLAKICKMDESIVSILGTRGTPGYIAPEMFNQIYSGVSHKSNVYSYGMLILEMIGRRKNYETGGSHSSELYFPDWIYKDLDAGNIDARSLANTEEENCIIMKIALVSLWCIQINPSSRPSMSKVVEMLDGSLQSIPYPPKPVMSSPTRVPLQYSDASYSYSSERLTNSRSE 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241680g00008 467 Pfam Protein kinase domain 154 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241680g00008 467 ProSitePatterns Protein kinases ATP-binding region signature. 156 178 IPR017441 GO:0005524
Stsc241680g00008 467 ProSiteProfiles Protein kinase domain profile. 150 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241680g00008 467 Gene3D Transferase(Phosphotransferase) domain 1 225 432 - -
Stsc241680g00008 467 SUPERFAMILY L domain-like 2 39 - -
Stsc241680g00008 467 FunFam S-receptor-like serine/threonine-protein kinase 117 224 - -
Stsc241680g00008 467 SMART serkin_6 150 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241680g00008 467 FunFam PR5-like receptor kinase 225 434 - -
Stsc241680g00008 467 Gene3D Ribonuclease Inhibitor 1 57 IPR032675 -
Stsc241680g00008 467 SUPERFAMILY Protein kinase-like (PK-like) 130 424 IPR011009 -
Stsc241680g00008 467 ProSitePatterns Serine/Threonine protein kinases active-site signature. 273 285 IPR008271 GO:0004672|GO:0006468
Stsc241680g00008 467 Gene3D Phosphorylase Kinase; domain 1 113 224 - -
Stsc241680g00008 467 PANTHER RUST RESISTANCE KINASE LR10-RELATED 124 443 IPR045874 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241680g00008 Stsc-Chr241680 58739 60364 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241680g00008 139 456 Receptor kinase-like Gene Family AT5G38280 57.362 1.32e-125 378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc241680g00008 Pkinase 1.2e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241680g00008 - - aip:107635702 532.717