Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241679g00040 ATGATGGGAAGAAGTGGAAGCAGTGATGAAAGTGGACTGAAGAAGGGGCCATGGACTCCAGAAGAAGACAAAATATTGGTTGATTACATTCAGAGACATGGCCATGGAAGTTGGAGAGCCCTTCCAAAGCTTGCTGGATTAAACAGATGCGGCAAGAGTTGCAGATTAAGATGGACTAATTACCTCAGACCTGATATCAAACGTGGCAAATTCTCTGATGAAGAAGAACAACTCATCATCAACTTGCATGCTGTTCTCGGCAACAAGTGGGCAGCTATAGCAACTCATTTGCCAGGGAGGACTGATAATGAAATAAAGAATTTCTGGAACACACATTTGAAAAAGAAGCTTCTTCAAATGGGATTAGATCCAATCACACACCGTCCAAGAACAGATCATCTTAATCTCCTTGCTAATCTGCAACACATTCTTGCTGCTGCTAACATTGTCAGCACTTTCTCAAACCCTAATCATCATGATCAAATCAACAATGCTCTAAGGCTTCAATCAGATGCAGCTAAGCTCAACTTTCTTCAAAACATGCTTCAAACCATGGGTGGTGGTGCAACCACTCCTGCTCCTGCACCCTCAAATTTAGAGCAACTAATCAATAATAATAGTAATAATGTTTTTGGATCATCATACTCATCATTGTCAGTGCCAGATAGTGTGGTTTATGAAGGTTTAGGGTTGAATTTGAATGACAATTCTAACCTTCATAGCATTTATAGTGCTTCAAATTCATCAATTGCTGCTGCTTCTTCCTCTCAGAATCATCAGTTGCAAAACCTTGAAGGCAGTAATAATAGTTATCAACAACAGATGATGATGATGATGAATGGTAGCAGCAGAAACAACAACAATAATAATAATAATAGCAGTAATTGCAGCGAGTCTCAGAATTTTGATGAACAATTTGGTTCAACAAATGAGGCTACTCCTACAGTGACACCATCAAGTTCACTTCCAAATCTGGTTTCAGTTTCAGCCTCACCTGAACGATGTTCTTCTTCTCCAGCCAAGAATAAGAATATTAAGAATAATGAAGAAAAGGAATGCTCTAATGATGATAATAATACTACCTTTGAAATCTGGGGAGATTTCATGGATGTGGATCCAAATGATGCTTATTGGAAAGATTTCGTTGACCAACAATCTAACCAGCCATGGTCGACAGTACAATGA 1185 0.3899 MMGRSGSSDESGLKKGPWTPEEDKILVDYIQRHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSDEEEQLIINLHAVLGNKWAAIATHLPGRTDNEIKNFWNTHLKKKLLQMGLDPITHRPRTDHLNLLANLQHILAAANIVSTFSNPNHHDQINNALRLQSDAAKLNFLQNMLQTMGGGATTPAPAPSNLEQLINNNSNNVFGSSYSSLSVPDSVVYEGLGLNLNDNSNLHSIYSASNSSIAAASSSQNHQLQNLEGSNNSYQQQMMMMMNGSSRNNNNNNNNSSNCSESQNFDEQFGSTNEATPTVTPSSSLPNLVSVSASPERCSSSPAKNKNIKNNEEKECSNDDNNTTFEIWGDFMDVDPNDAYWKDFVDQQSNQPWSTVQ 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241679g00040 394 FunFam MYB-related transcription factor 14 67 - -
Stsc241679g00040 394 SMART sant 14 64 IPR001005 -
Stsc241679g00040 394 SMART sant 67 115 IPR001005 -
Stsc241679g00040 394 Gene3D - 14 67 - -
Stsc241679g00040 394 FunFam Transcription factor MYB39 70 131 - -
Stsc241679g00040 394 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Stsc241679g00040 394 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Stsc241679g00040 394 Gene3D - 70 117 - -
Stsc241679g00040 394 MobiDBLite consensus disorder prediction 280 360 - -
Stsc241679g00040 394 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Stsc241679g00040 394 MobiDBLite consensus disorder prediction 280 343 - -
Stsc241679g00040 394 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Stsc241679g00040 394 CDD SANT 70 113 IPR001005 -
Stsc241679g00040 394 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Stsc241679g00040 394 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Stsc241679g00040 394 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 2 297 - -
Stsc241679g00040 394 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Stsc241679g00040 394 CDD SANT 17 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241679g00040 Stsc-Chr241679 221757 223996 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241679g00040 2 214 MYB Transcription Factor Family AT5G16770 61.972 1.70e-89 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc241679g00040 Myb_DNA-binding 1.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241679g00040 K09422 - gmx:547488 357.836