Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241679g00030 ATGTTGTCAGTAGCTCCTTCTCTTGACAGCACCCAAACCCAGCAACAACAACAGCAGCAAAGGACAGCTGACCCAACACAACCCAATTCTACTCCCCAAAATATCCACATCTTCAAGTCTAAATTACCCGATATACCCCTCGACAACCACATTCCTCTCCACTCTTTCTGCTTCCAAAAGCTAAATGAAATCTCTGACCGCCCATGCCTCATCATCGGCTCCGCCGGAAAAACCTACACCTACGGCGAGACATACCACGCCTCTCGGAGACTCGCCGCCGGCATGTCCGCCATCGGAATTACCAAGGGCGATGTCATCATGATCCTCCTCCAGAACTCTGCGGAGTTCGTCTTCTCCTTCATCGCCGCATCCATGATCGGCGCCGTCGCCACCACTGCCAACCCGTTCTACACTCCCGCCGAGATCTTCAAGCAGATCACCGCTTCCAAGGCCAAGCTCGTTATCACACAGGCAATGTACGTCGATAAGCTCAGAGACAACGATTCCTCCAAAATCGGCGAGGATTTCAAGGTCGTAACCGTCGACGACCCGCCGGAGAACTGCTTGCATTTCTCAGCGATCTCCGAGGGGAACGAGAACGACCTACCGGAGGTTGAGATCCACCCTGACGACGCGGTGGCGCTGCCGTTCTCCTCCGGAACAACCGGTCTCCCGAAAGGAGTGGTTCTCACGCACAGGAGCTTAACGACGAGCGTGGCTCAACAGGTTGACGGAGAGAACCCTAACCTGTACCTGAAAACGGAGGACGTTCTTCTCTGCGTTCTTCCTCTGTTCCACATATTCTCGCTGAACAGTGTTCTGTTGTGTGCTTTGAGAGCTGGAAGCGCGGTGTTGCTGATGCAGAAGTTCGAGATTGGAACGTTGCTGGAGCTCATTCAGAGGTACAGGGTTTCGGTCGCGATGGTGGTGCCGCCGCTCGTGCTGGCTCTGGCGAAGAATCCGATGGTGGCGGATTATGATTTGAGCTCTATTAGGTTGGTGCTCTCCGGCGCGGCGCCGCTCGGCAAGGAGCTCGAGGAGGCTCTCCGGAGCAGGGTACCTCAGGCTGTTCTTGGACAGGGGTACGGGATGACAGAGGCAGGGCCAGTGCTGTCCATGTGCTTGGGCTTTGCAAAGCAACCATTCCCAACGAAATCAGGTTCATGTGGCTCTGTTGTTAGAAATGCAGAGCTCAAGGTCATCGACCCTGAAACTGGTTGCTCTCTTGGTTATAATCAACCTGGTGAAATTTGCATCCGAGGTCAACAAATCATGAAAGGGTATTTGAACGATGATAAGGCTACAGCAGCAACTATCGATGTGGAGGGCTGGCTCCATACCGGTGACGTTGGTTATATAGATGATGATGATGAAATTTTTATTGTTGATAGGGTCAAGGAGCTCATCAAATTTAAAGGTTTCCAGGTGCCTCCTGCGGAACTTGAAGCCCTTCTTGTAAGCCACCCCTCTATTGCAGACGCAGCTGTTGTCCCGCAAAAGGATGTTGCTGCTGGTGAAGTTCCTGTTGCATTTGTGGTTAGATCTAATGGCTTTGAACTCACTGAAGAGGCTGTAAAGGAATTTATAGCTAAACAGGTAGTGTTTTACAAAAGACTACACAAAGTGTACTTTGTTCATGCAATTCCAAAGTCTCCATCAGGAAAGATATTAAGGAAAGACCTCAGAGCAAAGCTAGAAAACACCATCCTTAAACCCTAG 1719 0.5119 MLSVAPSLDSTQTQQQQQQQRTADPTQPNSTPQNIHIFKSKLPDIPLDNHIPLHSFCFQKLNEISDRPCLIIGSAGKTYTYGETYHASRRLAAGMSAIGITKGDVIMILLQNSAEFVFSFIAASMIGAVATTANPFYTPAEIFKQITASKAKLVITQAMYVDKLRDNDSSKIGEDFKVVTVDDPPENCLHFSAISEGNENDLPEVEIHPDDAVALPFSSGTTGLPKGVVLTHRSLTTSVAQQVDGENPNLYLKTEDVLLCVLPLFHIFSLNSVLLCALRAGSAVLLMQKFEIGTLLELIQRYRVSVAMVVPPLVLALAKNPMVADYDLSSIRLVLSGAAPLGKELEEALRSRVPQAVLGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGSVVRNAELKVIDPETGCSLGYNQPGEICIRGQQIMKGYLNDDKATAATIDVEGWLHTGDVGYIDDDDEIFIVDRVKELIKFKGFQVPPAELEALLVSHPSIADAAVVPQKDVAAGEVPVAFVVRSNGFELTEEAVKEFIAKQVVFYKRLHKVYFVHAIPKSPSGKILRKDLRAKLENTILKP 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241679g00030 572 Gene3D - 29 465 IPR042099 -
Stsc241679g00030 572 FunFam Long-chain-fatty-acid--CoA ligase FadD 39 466 - -
Stsc241679g00030 572 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 35 563 - -
Stsc241679g00030 572 CDD 4CL 49 561 - -
Stsc241679g00030 572 ProSitePatterns Putative AMP-binding domain signature. 215 226 IPR020845 -
Stsc241679g00030 572 MobiDBLite consensus disorder prediction 1 34 - -
Stsc241679g00030 572 FunFam 4-coumarate--CoA ligase 2 467 568 - -
Stsc241679g00030 572 Pfam AMP-binding enzyme C-terminal domain 480 555 IPR025110 -
Stsc241679g00030 572 Pfam AMP-binding enzyme 65 471 IPR000873 -
Stsc241679g00030 572 SUPERFAMILY Acetyl-CoA synthetase-like 14 568 - -
Stsc241679g00030 572 Gene3D - 466 570 IPR045851 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241679g00030 Stsc-Chr241679 165846 171131 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241679g00030 4 478 Monolignol Biosynthesis Gene Families AT1G65060 67.992 0.0 671
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241679g00030 K01904 - gmx:547492 941.028